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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
176.8
nTPM
HPA Brain:
383.6
nTPM
GTEx:
176.8
nTPM
FANTOM5:
316.1
Scaled Tags Per Million
Pig:
625.3
nTPM
Mouse:
340.9
nTPM
Allen mouse:
21.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA002728
Glial cells
Not detected
Neuronal cells
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
383.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 295.0
1898
Male, age 80, left hemisphere
365.6
2621
Female, age 67, right hemisphere
311.0
2529
Female, age 94, left hemisphere
289.9
2148
Female, age 91, left hemisphere
285.2
1855
Male, age 76, left hemisphere
263.9
1911
Female, age 85, right hemisphere
254.2
Dentate gyrus nTPM: 356.1
2530
Female, age 94, left hemisphere
494.8
1927
Female, age 91, both hemispheres
381.0
2528
Male, age 74, both hemispheres
377.2
2010
Male, age 76, both hemispheres
298.5
2531
Female, age 67, both hemispheres
295.9
2246
Female, age 85, both hemispheres
289.6
Entorhinal gyrus nTPM: 352.3
2613
Female, age 94, left hemisphere
469.5
2764
Male, age 80, right hemisphere
403.4
1938
Female, age 85, left hemisphere
358.5
1787
Male, age 76, left hemisphere
339.1
2117
Female, age 91, right hemisphere
310.7
2686
Male, age 75, right hemisphere
233.0
Hippocampus, CA1 nTPM: 357.7
2749
Male, age 80, left hemisphere
539.2
2527
Male, age 74, both hemispheres
344.8
2082
Female, age 91, right hemisphere
319.8
1873
Female, age 85, both hemispheres
308.6
2045
Male, age 76, both hemispheres
275.9
Hippocampus, CA2 nTPM: 357.1
2249
Male, age 74, both hemispheres
438.2
1963
Male, age 80, left hemisphere
390.4
1892
Male, age 76, both hemispheres
380.4
2437
Female, age 94, left hemisphere
374.9
2113
Female, age 91, right hemisphere
285.2
1940
Female, age 85, left hemisphere
273.6
Hippocampus, CA3 nTPM: 371.7
2436
Male, age 74, both hemispheres
571.6
2137
Male, age 80, left hemisphere
423.4
2620
Female, age 94, left hemisphere
371.4
1867
Male, age 76, both hemispheres
325.6
1891
Female, age 85, both hemispheres
276.3
2861
Female, age 67, both hemispheres
262.1
Parahippocampal cortex nTPM: 301.9
1990
Female, age 91, right hemisphere
381.3
2250
Female, age 67, right hemisphere
344.8
1850
Male, age 80, both hemispheres
328.7
2245
Female, age 91, both hemispheres
328.7
2693
Female, age 94, both hemispheres
322.1
1933
Female, age 85, both hemispheres
320.2
2532
Female, age 72, left hemisphere
277.0
2692
Male, age 74, both hemispheres
251.0
2018
Male, age 76, both hemispheres
241.7
2622
Female, age 67, right hemisphere
223.0
Perirhinal gyrus nTPM: 383.6
1847
Female, age 91, left hemisphere
478.1
1794
Male, age 80, right hemisphere
423.5
2521
Female, age 94, right hemisphere
371.0
1841
Female, age 85, right hemisphere
350.6
2848
Male, age 76, right hemisphere
294.6
Subiculum nTPM: 298.4
1977
Female, age 85, both hemispheres
382.1
1901
Male, age 80, both hemispheres
341.5
2619
Male, age 74, both hemispheres
312.4
2438
Female, age 94, left hemisphere
285.7
2729
Female, age 91, right hemisphere
238.9
2042
Male, age 76, both hemispheres
229.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
176.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 176.8
Samples: 197
Max nTPM: 380.7
Min nTPM: 25.9
Std nTPM: 64.7
Median nTPM: 165.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
380.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
358.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
330.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
324.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
310.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
307.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
304.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
299.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
295.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
292.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
289.3
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
287.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
287.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
278.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
277.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
271.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
271.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
269.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
269.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
268.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
267.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
266.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
265.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
264.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
261.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
259.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
256.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
254.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
254.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
248.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
246.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
246.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
243.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
242.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
241.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
241.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
240.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
239.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
238.3
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
238.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
236.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
235.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
234.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
232.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
231.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
231.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
230.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
230.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
228.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
227.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
221.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
217.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
217.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
214.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
212.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
212.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
211.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
210.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
207.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
203.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
203.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
203.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
202.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
201.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
198.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
198.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
197.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
195.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
195.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
193.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
190.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
190.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
190.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
190.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
190.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
189.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
187.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
185.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
185.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
184.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
182.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
181.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
178.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
178.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
177.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
177.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
175.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
175.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
174.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
174.0
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
172.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
172.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
171.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
170.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
169.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
167.8
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
167.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
165.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
165.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
165.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
165.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
165.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
164.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
164.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
163.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
163.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
161.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
159.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
158.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
158.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
157.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
156.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
156.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
155.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
155.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
154.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
152.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
151.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
148.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
148.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
146.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
145.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
145.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
145.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
142.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
142.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
141.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
141.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
141.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
141.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
140.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
139.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
139.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
136.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
136.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
134.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
134.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
133.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
132.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
132.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
132.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
131.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
131.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
131.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
130.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
130.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
129.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
129.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
129.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
128.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
127.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
127.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
127.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
126.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
126.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
126.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
125.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
124.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
124.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
124.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
123.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
122.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
121.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
121.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
121.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
119.6
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
119.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
117.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
114.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
113.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
113.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
112.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
108.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
108.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
105.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
102.1
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
101.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
100.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
100.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
97.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
95.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
94.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
93.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
92.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
88.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
86.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
84.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
84.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
84.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
83.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
80.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
80.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
72.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
52.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
45.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
45.6
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
25.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
340.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 307.8
Samples: 4
Max nTPM: 326.8
Min nTPM: 298.0
Sample A
Male
306.7
Sample B
Male
298.0
Sample C
Female
299.6
Sample D
Female
326.8
Hippocampal formation nTPM: 340.9
Samples: 4
Max nTPM: 393.2
Min nTPM: 277.9
Sample A
Male
277.9
Sample B
Male
338.8
Sample C
Female
353.8
Sample D
Female
393.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.