We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
13.3
nTPM
HPA Brain:
34.7
nTPM
GTEx:
13.3
nTPM
FANTOM5:
36.3
Scaled Tags Per Million
Pig:
51.3
nTPM
Mouse:
13.0
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 31.9
2019
Male, age 18, unknown
54.4
2666
Male, age 74, left hemisphere
37.9
2828
Female, age 72, unknown
36.9
1827
Male, age 72, unknown
34.6
1870
Female, age 42, unknown
32.2
1830
Male, age 51, unknown
27.4
2586
Male, age 75, left hemisphere
26.7
2411
Female, age 72, unknown
26.0
1833
Male, age 53, unknown
24.4
2219
Male, age 76, both hemispheres
18.0
Dorsal raphe nucleus nTPM: 29.4
1828
Male, age 53, unknown
31.9
2298
Female, age 72, unknown
30.5
2016
Female, age 72, unknown
29.6
2750
Male, age 76, both hemispheres
28.2
2047
Male, age 72, unknown
26.6
Inferior colliculus nTPM: 28.6
2097
Female, age 72, unknown
37.1
1890
Male, age 53, unknown
28.0
1848
Female, age 42, unknown
27.7
2849
Male, age 72, unknown
21.6
Median raphe nucleus nTPM: 34.7
2220
Male, age 76, midline
34.7
Periaquaductal grey, anterior nTPM: 31.5
1795
Male, age 51, unknown
34.6
1947
Male, age 18, unknown
31.0
2502
Female, age 75, unknown
29.0
Periaquaductal grey, dorsal nTPM: 28.9
2850
Male, age 76, both hemispheres
32.8
1831
Male, age 72, unknown
30.4
2464
Female, age 72, unknown
28.3
1840
Male, age 53, unknown
24.2
Periaquaductal grey, lateral nTPM: 25.8
2140
Male, age 76, both hemispheres
28.3
2053
Male, age 18, unknown
26.1
2272
Male, age 74, both hemispheres
22.9
Pretectal area nTPM: 30.5
1817
Female, age 42, unknown
45.9
2007
Male, age 72, unknown
39.2
1815
Male, age 53, unknown
35.2
1944
Female, age 72, unknown
33.6
1816
Male, age 51, unknown
30.7
2667
Female, age 75, unknown
29.1
2273
Male, age 74, both hemispheres
28.8
2224
Female, age 72, unknown
28.4
2316
Male, age 76, right hemisphere
26.6
2825
Male, age 18, unknown
20.5
2407
Male, age 75, both hemispheres
17.2
Red nucleus nTPM: 33.8
1954
Female, age 42, unknown
40.4
1821
Female, age 72, unknown
39.0
2785
Male, age 18, unknown
38.2
1865
Male, age 51, unknown
37.3
2823
Male, age 76, right hemisphere
36.9
1904
Male, age 53, unknown
35.4
2503
Female, age 72, unknown
34.7
2725
Female, age 75, unknown
32.2
2588
Male, age 74, left hemisphere
31.5
2769
Male, age 72, unknown
30.5
2227
Male, age 72, unknown
29.7
2584
Male, age 75, left hemisphere
20.5
Substantia nigra nTPM: 24.8
2665
Male, age 74, both hemispheres
37.6
1889
Female, age 72, unknown
30.4
2409
Female, age 72, unknown
25.2
1851
Male, age 51, unknown
24.3
1916
Female, age 42, unknown
23.8
2590
Female, age 75, unknown
23.2
1941
Male, age 53, unknown
23.0
2583
Male, age 75, right hemisphere
22.9
2241
Male, age 72, unknown
21.3
2699
Male, age 18, unknown
16.7
Superior colliculus nTPM: 29.1
1995
Male, age 72, unknown
36.3
2668
Female, age 75, unknown
34.2
1913
Female, age 42, unknown
33.3
1796
Male, age 53, unknown
31.9
2087
Female, age 72, unknown
30.9
2587
Male, age 74, left hemisphere
30.2
2261
Male, age 18, unknown
28.9
1839
Male, age 51, unknown
23.9
1895
Male, age 76, right hemisphere
23.0
2664
Male, age 75, both hemispheres
18.4
Ventral tegmental area nTPM: 25.8
2410
Female, age 72, unknown
27.2
1942
Male, age 51, unknown
26.9
2223
Female, age 72, unknown
26.6
2021
Male, age 53, unknown
26.4
2218
Male, age 76, both hemispheres
25.2
1915
Female, age 42, unknown
22.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 13.3
Samples: 139
Max nTPM: 50.5
Min nTPM: 3.4
Std nTPM: 6.7
Median nTPM: 11.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
50.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
41.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
38.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
34.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
30.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
29.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
27.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
24.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
22.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
21.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
21.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
21.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
20.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
19.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
19.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
19.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
18.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
18.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
18.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
18.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
18.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
18.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
17.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
17.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
17.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
16.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
16.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
16.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
16.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
16.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
16.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
15.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
15.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
15.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
15.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
15.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
14.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
14.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
14.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
14.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
14.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
14.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
14.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
14.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
14.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
14.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
13.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
13.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
13.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
13.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
13.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
13.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
13.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
12.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
12.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
12.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
12.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
12.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
12.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
12.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
12.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
12.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
12.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
12.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
12.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
12.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
12.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
12.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
11.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
11.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
11.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
11.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
11.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
11.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
11.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
11.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
11.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
11.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
10.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
10.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
10.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
10.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
10.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
10.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
10.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
10.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
10.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
10.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
10.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
10.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
10.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
10.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
10.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
10.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
9.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
9.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
9.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
9.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
9.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
9.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
9.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
9.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
9.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
9.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
9.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
9.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
9.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
9.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
9.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
9.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
9.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
9.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
8.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
8.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
8.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
8.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
8.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
8.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
8.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
8.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
8.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
7.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
7.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
7.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
7.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
7.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
7.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
7.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
7.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
7.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
7.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
6.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
6.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
6.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
6.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
6.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
5.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
5.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
3.4
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 13.0
Samples: 4
Max nTPM: 14.5
Min nTPM: 12.4
Sample A
Male
12.4
Sample B
Male
14.5
Sample C
Female
12.6
Sample D
Female
12.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.