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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
61.9
nTPM
HPA Brain:
53.2
nTPM
GTEx:
61.9
nTPM
FANTOM5:
54.2
Scaled Tags Per Million
Pig:
71.7
nTPM
Mouse:
81.4
nTPM
Allen mouse:
8.7
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
53.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 42.8
2219
Male, age 76, both hemispheres
48.8
1827
Male, age 72, unknown
48.5
2666
Male, age 74, left hemisphere
44.9
2019
Male, age 18, unknown
43.2
2411
Female, age 72, unknown
42.4
1833
Male, age 53, unknown
41.8
1870
Female, age 42, unknown
41.5
2828
Female, age 72, unknown
41.2
1830
Male, age 51, unknown
40.2
2586
Male, age 75, left hemisphere
35.3
Dorsal raphe nucleus nTPM: 43.8
2298
Female, age 72, unknown
51.2
2750
Male, age 76, both hemispheres
45.5
1828
Male, age 53, unknown
45.4
2047
Male, age 72, unknown
41.0
2016
Female, age 72, unknown
36.1
Inferior colliculus nTPM: 41.6
2849
Male, age 72, unknown
43.7
2097
Female, age 72, unknown
42.6
1890
Male, age 53, unknown
41.1
1848
Female, age 42, unknown
39.2
Median raphe nucleus nTPM: 53.2
2220
Male, age 76, midline
53.2
Periaquaductal grey, anterior nTPM: 46.4
1947
Male, age 18, unknown
51.0
1795
Male, age 51, unknown
49.9
2502
Female, age 75, unknown
38.2
Periaquaductal grey, dorsal nTPM: 40.4
2850
Male, age 76, both hemispheres
45.8
1840
Male, age 53, unknown
39.5
1831
Male, age 72, unknown
38.8
2464
Female, age 72, unknown
37.5
Periaquaductal grey, lateral nTPM: 39.9
2272
Male, age 74, both hemispheres
45.4
2140
Male, age 76, both hemispheres
39.6
2053
Male, age 18, unknown
34.7
Pretectal area nTPM: 45.0
1816
Male, age 51, unknown
51.6
1817
Female, age 42, unknown
50.1
2007
Male, age 72, unknown
49.8
2667
Female, age 75, unknown
47.9
2224
Female, age 72, unknown
46.4
1815
Male, age 53, unknown
46.0
1944
Female, age 72, unknown
44.9
2825
Male, age 18, unknown
43.4
2273
Male, age 74, both hemispheres
43.2
2407
Male, age 75, both hemispheres
37.8
2316
Male, age 76, right hemisphere
33.8
Red nucleus nTPM: 42.2
2725
Female, age 75, unknown
53.6
1821
Female, age 72, unknown
46.2
2584
Male, age 75, left hemisphere
43.0
1904
Male, age 53, unknown
42.6
2503
Female, age 72, unknown
42.5
2785
Male, age 18, unknown
42.1
2823
Male, age 76, right hemisphere
40.8
1954
Female, age 42, unknown
40.5
2227
Male, age 72, unknown
39.1
2769
Male, age 72, unknown
39.1
1865
Male, age 51, unknown
38.7
2588
Male, age 74, left hemisphere
38.6
Substantia nigra nTPM: 50.2
1916
Female, age 42, unknown
69.3
2241
Male, age 72, unknown
56.1
1851
Male, age 51, unknown
53.7
1889
Female, age 72, unknown
49.2
2665
Male, age 74, both hemispheres
49.2
2409
Female, age 72, unknown
48.5
1941
Male, age 53, unknown
47.2
2699
Male, age 18, unknown
47.0
2590
Female, age 75, unknown
41.0
2583
Male, age 75, right hemisphere
40.4
Superior colliculus nTPM: 39.9
2587
Male, age 74, left hemisphere
44.6
1796
Male, age 53, unknown
44.0
2261
Male, age 18, unknown
43.8
2087
Female, age 72, unknown
43.3
2668
Female, age 75, unknown
42.3
1913
Female, age 42, unknown
39.4
1895
Male, age 76, right hemisphere
39.3
1839
Male, age 51, unknown
37.3
1995
Male, age 72, unknown
33.6
2664
Male, age 75, both hemispheres
31.7
Ventral tegmental area nTPM: 45.8
1915
Female, age 42, unknown
50.8
2410
Female, age 72, unknown
49.2
2218
Male, age 76, both hemispheres
48.7
2223
Female, age 72, unknown
42.8
2021
Male, age 53, unknown
41.8
1942
Male, age 51, unknown
41.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
61.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 61.9
Samples: 139
Max nTPM: 108.6
Min nTPM: 38.3
Std nTPM: 14.3
Median nTPM: 59.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
108.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
105.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
103.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
93.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
92.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
88.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
88.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
87.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
85.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
85.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
85.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
84.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
83.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
81.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
80.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
79.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
79.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
78.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
77.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
77.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
77.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
76.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
76.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
75.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
75.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
74.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
74.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
73.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
73.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
73.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
72.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
72.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
71.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
70.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
70.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
70.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
70.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
69.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
69.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
69.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
68.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
68.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
68.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
67.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
67.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
66.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
66.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
65.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
65.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
65.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
65.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
64.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
63.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
63.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
63.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
63.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
62.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
62.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
62.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
62.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
62.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
62.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
62.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
62.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
61.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
61.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
60.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
60.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
60.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
59.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
59.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
59.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
59.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
58.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
58.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
58.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
58.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
58.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
57.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
57.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
57.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
57.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
57.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
57.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
57.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
55.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
55.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
54.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
54.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
54.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
53.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
53.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
52.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
52.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
52.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
52.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
52.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
51.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
51.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
51.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
51.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
50.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
50.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
49.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
49.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
49.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
49.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
49.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
49.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
49.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
49.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
49.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
48.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
48.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
48.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
48.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
48.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
48.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
48.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
47.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
46.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
46.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
46.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
45.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
45.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
45.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
45.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
44.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
44.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
43.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
42.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
42.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
42.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
42.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
41.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
40.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
39.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
39.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
38.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
81.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 81.4
Samples: 4
Max nTPM: 85.8
Min nTPM: 76.8
Sample A
Male
85.8
Sample B
Male
76.8
Sample C
Female
78.9
Sample D
Female
84.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.