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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
60.5
nTPM
HPA Brain:
74.6
nTPM
GTEx:
60.5
nTPM
FANTOM5:
0.7
Scaled Tags Per Million
Pig:
54.6
nTPM
Mouse:
0.0
nTPM
Allen mouse:
1.7
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
74.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 63.1
1830
Male, age 51, unknown
78.2
1870
Female, age 42, unknown
77.6
1833
Male, age 53, unknown
75.1
2411
Female, age 72, unknown
74.1
2019
Male, age 18, unknown
61.5
2666
Male, age 74, left hemisphere
58.1
2828
Female, age 72, unknown
57.0
2219
Male, age 76, both hemispheres
53.0
1827
Male, age 72, unknown
49.7
2586
Male, age 75, left hemisphere
47.0
Dorsal raphe nucleus nTPM: 46.2
2750
Male, age 76, both hemispheres
72.1
2016
Female, age 72, unknown
58.7
1828
Male, age 53, unknown
43.6
2047
Male, age 72, unknown
28.3
2298
Female, age 72, unknown
28.3
Inferior colliculus nTPM: 43.4
1890
Male, age 53, unknown
46.1
1848
Female, age 42, unknown
44.7
2849
Male, age 72, unknown
42.9
2097
Female, age 72, unknown
39.7
Median raphe nucleus nTPM: 31.7
2220
Male, age 76, midline
31.7
Periaquaductal grey, anterior nTPM: 49.5
2502
Female, age 75, unknown
66.8
1947
Male, age 18, unknown
47.3
1795
Male, age 51, unknown
34.5
Periaquaductal grey, dorsal nTPM: 39.8
2464
Female, age 72, unknown
57.3
1831
Male, age 72, unknown
42.6
1840
Male, age 53, unknown
30.1
2850
Male, age 76, both hemispheres
29.0
Periaquaductal grey, lateral nTPM: 36.8
2053
Male, age 18, unknown
46.8
2272
Male, age 74, both hemispheres
34.5
2140
Male, age 76, both hemispheres
29.1
Pretectal area nTPM: 44.0
2316
Male, age 76, right hemisphere
75.5
1815
Male, age 53, unknown
58.8
2407
Male, age 75, both hemispheres
53.9
2825
Male, age 18, unknown
51.9
2007
Male, age 72, unknown
41.7
1817
Female, age 42, unknown
40.9
2224
Female, age 72, unknown
40.1
2273
Male, age 74, both hemispheres
34.8
1944
Female, age 72, unknown
29.2
2667
Female, age 75, unknown
29.1
1816
Male, age 51, unknown
28.6
Red nucleus nTPM: 74.6
2823
Male, age 76, right hemisphere
89.1
1865
Male, age 51, unknown
88.7
2503
Female, age 72, unknown
87.5
1821
Female, age 72, unknown
81.6
1904
Male, age 53, unknown
80.8
2785
Male, age 18, unknown
75.5
2227
Male, age 72, unknown
72.6
2769
Male, age 72, unknown
72.1
1954
Female, age 42, unknown
69.6
2588
Male, age 74, left hemisphere
67.9
2725
Female, age 75, unknown
59.6
2584
Male, age 75, left hemisphere
49.9
Substantia nigra nTPM: 53.1
2409
Female, age 72, unknown
74.2
2590
Female, age 75, unknown
61.6
1851
Male, age 51, unknown
59.4
2699
Male, age 18, unknown
58.7
2241
Male, age 72, unknown
58.2
2665
Male, age 74, both hemispheres
48.3
1889
Female, age 72, unknown
47.6
2583
Male, age 75, right hemisphere
46.8
1941
Male, age 53, unknown
43.0
1916
Female, age 42, unknown
33.1
Superior colliculus nTPM: 60.8
1913
Female, age 42, unknown
94.4
1995
Male, age 72, unknown
91.3
1895
Male, age 76, right hemisphere
79.1
1839
Male, age 51, unknown
62.6
2668
Female, age 75, unknown
61.4
2587
Male, age 74, left hemisphere
61.0
2664
Male, age 75, both hemispheres
49.0
1796
Male, age 53, unknown
43.3
2087
Female, age 72, unknown
34.5
2261
Male, age 18, unknown
31.3
Ventral tegmental area nTPM: 50.4
2410
Female, age 72, unknown
61.1
1942
Male, age 51, unknown
53.2
2223
Female, age 72, unknown
51.6
2021
Male, age 53, unknown
50.5
1915
Female, age 42, unknown
46.0
2218
Male, age 76, both hemispheres
40.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
60.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 60.5
Samples: 139
Max nTPM: 204.6
Min nTPM: 12.3
Std nTPM: 33.9
Median nTPM: 53.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
204.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
159.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
157.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
151.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
145.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
141.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
136.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
135.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
123.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
118.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
116.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
105.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
103.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
102.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
95.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
94.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
94.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
91.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
90.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
89.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
88.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
87.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
87.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
87.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
87.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
87.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
86.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
85.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
83.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
83.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
83.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
82.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
81.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
81.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
80.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
80.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
79.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
75.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
75.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
73.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
73.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
73.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
71.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
70.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
69.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
69.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
68.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
68.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
68.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
67.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
67.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
66.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
66.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
65.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
64.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
64.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
64.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
61.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
61.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
61.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
60.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
59.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
56.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
56.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
55.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
54.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
53.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
53.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
53.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
53.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
52.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
50.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
50.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
50.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
49.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
48.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
48.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
47.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
47.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
47.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
47.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
46.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
45.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
44.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
44.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
44.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
44.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
43.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
42.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
42.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
41.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
40.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
39.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
38.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
38.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
38.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
38.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
38.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
38.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
38.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
37.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
37.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
36.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
35.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
34.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
33.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
33.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
33.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
32.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
32.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
32.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
31.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
30.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
29.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
29.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
29.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
28.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
28.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
28.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
28.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
27.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
27.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
26.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
26.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
26.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
25.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
25.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
24.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
24.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
23.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
23.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
21.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
20.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
20.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
20.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
17.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
16.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
15.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
12.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 82.2
Samples: 4
Max nTPM: 86.0
Min nTPM: 73.6
Sample A
Male
85.7
Sample B
Male
86.0
Sample C
Female
83.3
Sample D
Female
73.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.