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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
296.1
nTPM
GTEx:
296.1
nTPM
FANTOM5:
125.9
Scaled Tags Per Million
Pig:
340.6
nTPM
Mouse:
170.9
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA008779
Pigment epithelial cells
Not detected
Immunohistochemical staining of human retina shows strong positivity in inner segments of photoreceptor cells.
100 ฮผm
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Low
Inner plexiform layer
Not detected
Ganglion cells
Medium
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA015907
Pigment epithelial cells
Not detected
Immunohistochemical staining of human retina shows strong cytoplasmic positivity in photoreceptor cell segments.
100 ฮผm
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
296.1
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 296.1
Samples: 105
Max nTPM: 652.7
Min nTPM: 115.4
Std nTPM: 91.3
Median nTPM:
490_1
67 years, female
652.7
117_1
61 years, male
498.0
491_1
89 years, female
478.4
89_1
63 years, male
471.8
217_1
76 years, male
456.0
526_1
61 years, male
445.4
32_1
67 years, male
442.2
415_1
77 years, female
429.7
311_1
78 years, male
428.2
495_1
57 years, female
409.1
139_1
64 years, female
409.0
149_1
88 years, male
404.3
162_1
79 years, female
404.2
6_1
73 years, female
403.0
119_1
70 years, female
400.6
499_1
55 years, female
388.7
447_1
81 years, male
386.0
347_1
72 years, male
384.3
324_1
76 years, male
378.8
81_1
67 years, male
377.0
414_1
84 years, female
369.2
466_1
57 years, female
367.6
307_1
66 years, female
363.9
321_1
62 years, female
363.6
313_1
79 years, female
362.9
142_1
61 years, female
360.8
251_1
78 years, male
354.1
126_1
63 years, male
353.2
43_1
64 years, female
351.2
9_1
66 years, female
347.2
2_1
77 years, female
346.5
348_1
84 years, male
341.9
352_1
62 years, male
337.8
35_1
74 years, female
332.0
246_1
77 years, male
331.9
468_1
89 years, male
329.6
266_1
85 years, male
327.5
153_1
70 years, female
324.0
293_1
68 years, female
323.3
18_1
88 years, male
323.1
115_1
83 years, male
317.7
229_1
69 years, female
316.2
145_1
84 years, male
309.1
315_1
62 years, female
307.3
322_1
76 years, male
302.6
518_1
75 years, female
300.7
350_1
84 years, female
296.9
99_1
64 years, male
291.8
413_1
59 years, female
289.7
172_1
72 years, female
289.1
425_1
59 years, female
288.6
237_1
82 years, male
288.3
480_1
63 years, male
287.7
389_1
86 years, female
282.8
375_1
74 years, female
282.4
286_1
68 years, female
281.0
120_1
70 years, female
278.4
42_1
85 years, male
277.0
355_1
70 years, female
276.4
386_1
76 years, male
272.4
406_1
79 years, male
271.9
319_1
81 years, male
267.4
317_1
60 years, male
263.8
292_1
71 years, male
263.3
405_1
91 years, male
261.2
137_1
83 years, male
261.1
308_1
70 years, female
260.1
109_1
81 years, female
252.8
335_1
73 years, female
250.1
243_1
75 years, male
248.0
173_1
67 years, male
247.2
396_1
62 years, male
244.9
503_1
68 years, male
244.5
316_1
62 years, male
242.9
189_1
76 years, male
241.3
17_1
71 years, male
240.6
291_1
76 years, male
239.7
41_1
94 years, female
239.2
517_1
88 years, male
237.2
218_1
71 years, female
235.9
320_1
89 years, female
234.0
265_1
87 years, male
233.7
384_1
83 years, male
231.4
254_1
77 years, female
230.7
177_1
74 years, male
229.3
318_1
68 years, male
227.9
376_1
75 years, female
217.7
349_1
83 years, male
213.0
404_1
82 years, female
209.6
354_1
81 years, female
198.6
351_1
91 years, male
197.2
377_1
82 years, female
194.1
353_1
82 years, female
189.4
163_1
78 years, male
184.3
394_1
75 years, female
183.7
379_1
60 years, male
181.7
4_1
88 years, female
174.5
356_1
87 years, female
171.2
314_1
67 years, male
159.4
288_1
66 years, female
157.7
501_1
88 years, male
155.4
264_1
73 years, female
151.3
506_1
65 years, male
122.1
295_1
61 years, female
117.9
452_1
88 years, female
115.4
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.