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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
288.9
nTPM
GTEx:
288.9
nTPM
FANTOM5:
52.9
Scaled Tags Per Million
Pig:
440.5
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB025264
Pigment epithelial cells
Not detected
Immunohistochemical staining of human retina shows strong cytoplasmic positivity in rods.
100 ฮผm
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA075240
Pigment epithelial cells
Not detected
Immunohistochemical staining of human retina shows strong cytoplasmic positivity in rod photoreceptor cells.
50 ฮผm
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Medium
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
288.9
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 288.9
Samples: 105
Max nTPM: 629.6
Min nTPM: 17.0
Std nTPM: 122.6
Median nTPM:
415_1
77 years, female
629.6
162_1
79 years, female
567.9
32_1
67 years, male
522.4
491_1
89 years, female
521.9
315_1
62 years, female
498.7
142_1
61 years, female
480.6
324_1
76 years, male
480.4
526_1
61 years, male
478.0
414_1
84 years, female
477.0
413_1
59 years, female
474.1
81_1
67 years, male
463.7
217_1
76 years, male
459.7
172_1
72 years, female
449.2
466_1
57 years, female
439.0
6_1
73 years, female
435.7
35_1
74 years, female
431.0
43_1
64 years, female
427.5
311_1
78 years, male
422.5
405_1
91 years, male
419.3
149_1
88 years, male
416.9
386_1
76 years, male
412.8
243_1
75 years, male
398.2
229_1
69 years, female
395.5
286_1
68 years, female
392.4
153_1
70 years, female
386.6
376_1
75 years, female
378.2
425_1
59 years, female
368.4
518_1
75 years, female
366.3
352_1
62 years, male
362.1
120_1
70 years, female
356.5
17_1
71 years, male
350.9
490_1
67 years, female
346.4
316_1
62 years, male
332.6
251_1
78 years, male
329.4
9_1
66 years, female
326.6
379_1
60 years, male
325.8
347_1
72 years, male
325.6
468_1
89 years, male
325.2
499_1
55 years, female
323.1
321_1
62 years, female
318.4
313_1
79 years, female
317.0
99_1
64 years, male
316.2
517_1
88 years, male
315.1
480_1
63 years, male
310.6
119_1
70 years, female
310.5
404_1
82 years, female
310.4
389_1
86 years, female
309.7
354_1
81 years, female
302.7
335_1
73 years, female
302.3
237_1
82 years, male
299.4
447_1
81 years, male
295.9
348_1
84 years, male
288.6
137_1
83 years, male
288.4
189_1
76 years, male
283.1
218_1
71 years, female
270.0
349_1
83 years, male
267.8
109_1
81 years, female
267.7
375_1
74 years, female
267.5
145_1
84 years, male
266.0
394_1
75 years, female
264.2
293_1
68 years, female
264.1
350_1
84 years, female
262.3
265_1
87 years, male
259.3
117_1
61 years, male
258.0
319_1
81 years, male
257.0
89_1
63 years, male
255.0
320_1
89 years, female
250.9
177_1
74 years, male
244.9
163_1
78 years, male
230.3
353_1
82 years, female
229.8
292_1
71 years, male
229.7
291_1
76 years, male
217.5
322_1
76 years, male
203.4
396_1
62 years, male
198.8
266_1
85 years, male
198.5
2_1
77 years, female
195.2
173_1
67 years, male
188.5
314_1
67 years, male
186.1
307_1
66 years, female
180.4
351_1
91 years, male
178.2
246_1
77 years, male
175.3
254_1
77 years, female
173.8
126_1
63 years, male
169.4
318_1
68 years, male
161.9
115_1
83 years, male
158.9
356_1
87 years, female
154.5
41_1
94 years, female
153.7
317_1
60 years, male
152.3
501_1
88 years, male
148.1
377_1
82 years, female
146.9
495_1
57 years, female
144.8
506_1
65 years, male
140.1
42_1
85 years, male
138.6
406_1
79 years, male
135.6
355_1
70 years, female
135.2
4_1
88 years, female
134.3
18_1
88 years, male
134.3
139_1
64 years, female
129.0
452_1
88 years, female
129.0
503_1
68 years, male
123.7
384_1
83 years, male
115.6
295_1
61 years, female
114.1
288_1
66 years, female
111.5
308_1
70 years, female
80.7
264_1
73 years, female
17.0
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.