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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
43.9
nTPM
HPA Brain:
237.2
nTPM
GTEx:
43.9
nTPM
FANTOM5:
31.7
Scaled Tags Per Million
Pig:
91.9
nTPM
Mouse:
97.0
nTPM
Allen mouse:
9.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
237.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 192.8
2586
Male, age 75, left hemisphere
380.2
2828
Female, age 72, unknown
249.3
1827
Male, age 72, unknown
216.5
2666
Male, age 74, left hemisphere
196.0
1870
Female, age 42, unknown
169.6
1833
Male, age 53, unknown
164.1
2411
Female, age 72, unknown
162.8
2219
Male, age 76, both hemispheres
141.6
1830
Male, age 51, unknown
140.0
2019
Male, age 18, unknown
107.7
Dorsal raphe nucleus nTPM: 219.3
2047
Male, age 72, unknown
264.8
1828
Male, age 53, unknown
249.3
2016
Female, age 72, unknown
236.4
2298
Female, age 72, unknown
217.1
2750
Male, age 76, both hemispheres
128.7
Inferior colliculus nTPM: 226.0
2849
Male, age 72, unknown
246.8
1848
Female, age 42, unknown
246.6
2097
Female, age 72, unknown
215.5
1890
Male, age 53, unknown
195.2
Median raphe nucleus nTPM: 148.8
2220
Male, age 76, midline
148.8
Periaquaductal grey, anterior nTPM: 228.2
2502
Female, age 75, unknown
247.6
1795
Male, age 51, unknown
237.8
1947
Male, age 18, unknown
199.1
Periaquaductal grey, dorsal nTPM: 237.2
1840
Male, age 53, unknown
318.4
1831
Male, age 72, unknown
220.5
2464
Female, age 72, unknown
220.5
2850
Male, age 76, both hemispheres
189.4
Periaquaductal grey, lateral nTPM: 231.1
2053
Male, age 18, unknown
318.6
2140
Male, age 76, both hemispheres
226.9
2272
Male, age 74, both hemispheres
147.7
Pretectal area nTPM: 224.2
2825
Male, age 18, unknown
276.1
2667
Female, age 75, unknown
269.3
1816
Male, age 51, unknown
258.1
2407
Male, age 75, both hemispheres
250.5
1944
Female, age 72, unknown
245.3
1817
Female, age 42, unknown
209.8
2224
Female, age 72, unknown
205.0
1815
Male, age 53, unknown
198.4
2273
Male, age 74, both hemispheres
198.2
2316
Male, age 76, right hemisphere
191.8
2007
Male, age 72, unknown
163.4
Red nucleus nTPM: 154.9
2588
Male, age 74, left hemisphere
186.7
1954
Female, age 42, unknown
170.1
2725
Female, age 75, unknown
169.4
2503
Female, age 72, unknown
168.4
1821
Female, age 72, unknown
167.1
2584
Male, age 75, left hemisphere
167.1
2769
Male, age 72, unknown
163.6
2227
Male, age 72, unknown
160.9
2823
Male, age 76, right hemisphere
137.5
1904
Male, age 53, unknown
134.6
1865
Male, age 51, unknown
125.3
2785
Male, age 18, unknown
107.7
Substantia nigra nTPM: 204.4
2699
Male, age 18, unknown
257.2
2665
Male, age 74, both hemispheres
234.7
1916
Female, age 42, unknown
220.6
2241
Male, age 72, unknown
206.3
2583
Male, age 75, right hemisphere
205.4
1889
Female, age 72, unknown
201.8
1851
Male, age 51, unknown
196.1
1941
Male, age 53, unknown
193.4
2590
Female, age 75, unknown
169.0
2409
Female, age 72, unknown
159.0
Superior colliculus nTPM: 226.0
2664
Male, age 75, both hemispheres
453.7
2261
Male, age 18, unknown
254.8
2087
Female, age 72, unknown
245.5
1839
Male, age 51, unknown
239.9
2587
Male, age 74, left hemisphere
217.5
1796
Male, age 53, unknown
205.7
2668
Female, age 75, unknown
174.8
1995
Male, age 72, unknown
164.4
1895
Male, age 76, right hemisphere
160.5
1913
Female, age 42, unknown
143.2
Ventral tegmental area nTPM: 176.8
1942
Male, age 51, unknown
208.2
1915
Female, age 42, unknown
198.3
2021
Male, age 53, unknown
191.7
2410
Female, age 72, unknown
187.9
2218
Male, age 76, both hemispheres
146.4
2223
Female, age 72, unknown
128.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
43.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 43.9
Samples: 139
Max nTPM: 143.5
Min nTPM: 7.1
Std nTPM: 24.4
Median nTPM: 39.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
143.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
130.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
108.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
106.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
101.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
98.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
95.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
91.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
89.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
84.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
79.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
79.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
79.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
78.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
74.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
72.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
70.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
69.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
68.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
67.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
67.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
65.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
64.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
63.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
63.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
63.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
62.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
61.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
61.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
61.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
59.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
57.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
56.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
56.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
56.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
56.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
54.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
54.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
53.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
53.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
53.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
52.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
51.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
50.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
49.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
49.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
49.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
47.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
47.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
46.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
45.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
45.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
45.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
45.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
44.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
44.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
43.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
43.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
43.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
43.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
43.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
42.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
41.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
41.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
40.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
40.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
40.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
39.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
39.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
39.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
39.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
38.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
38.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
37.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
37.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
37.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
36.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
36.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
35.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
35.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
35.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
35.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
34.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
34.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
33.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
33.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
32.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
32.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
32.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
32.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
32.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
32.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
30.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
30.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
30.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
30.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
29.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
29.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
29.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
28.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
28.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
27.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
26.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
25.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
25.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
25.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
25.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
24.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
23.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
23.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
23.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
23.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
23.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
22.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
21.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
21.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
21.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
21.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
20.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
19.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
19.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
19.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
19.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
18.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
17.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
17.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
17.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
17.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
16.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
16.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
15.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
15.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
13.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
12.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
10.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
10.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
10.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
9.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
7.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
97.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 97.0
Samples: 4
Max nTPM: 100.4
Min nTPM: 90.1
Sample A
Male
90.1
Sample B
Male
100.4
Sample C
Female
99.3
Sample D
Female
98.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.