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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TTC38 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
62.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
323.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
259.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
255.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
241.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
239.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
187.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
169.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
166.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
157.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
153.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
142.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
136.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
128.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
127.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
125.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
125.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
121.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
121.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
116.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
115.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
115.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
114.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
113.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
112.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
111.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
110.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
109.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
108.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
108.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
106.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
105.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
105.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
105.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
105.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
103.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
103.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
101.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
101.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
99.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
99.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
97.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
97.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
95.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
95.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
95.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
94.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
94.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
93.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
93.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
92.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
91.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
89.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
89.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
89.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
89.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
88.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
87.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
87.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
87.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
86.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
86.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
86.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
86.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
86.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
86.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
86.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
86.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
85.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
85.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
85.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
85.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
83.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
82.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
82.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
81.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
81.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
81.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
81.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
81.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
80.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
80.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
80.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
80.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
79.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
79.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
78.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
78.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
78.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
77.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
77.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
76.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
76.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
75.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
75.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
75.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
75.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
75.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
74.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
74.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
73.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
73.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
73.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
73.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
73.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
73.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
72.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
72.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
72.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
72.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
72.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
72.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
71.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
71.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
71.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
71.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
71.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
71.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
71.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
70.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
70.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
70.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
70.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
69.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
69.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
68.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
68.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
68.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
68.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
68.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
67.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
67.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
67.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
67.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
66.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
66.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
66.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
65.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
65.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
65.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
64.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
64.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
63.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
63.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
63.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
63.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
63.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
62.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
62.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
61.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
61.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
61.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
61.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
61.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
61.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
61.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
61.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
60.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
60.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
60.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
60.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
59.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
59.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
59.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
59.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
58.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
58.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
58.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
57.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
57.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
57.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
57.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
57.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
56.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
56.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
56.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
56.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
55.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
55.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
55.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
55.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
55.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
55.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
54.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
54.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
54.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
53.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
53.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
53.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
53.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
53.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
53.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
53.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
52.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
52.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
52.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
52.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
52.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
52.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
51.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
51.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
51.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
51.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
51.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
51.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
50.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
50.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
50.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
50.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
49.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
49.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
48.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
48.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
48.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
48.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
48.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
48.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
48.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
47.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
47.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
47.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
47.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
47.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
47.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
47.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
47.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
46.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
46.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
46.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
46.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
46.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
45.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
45.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
45.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
45.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
44.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
44.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
44.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
44.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
44.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
44.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
43.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
43.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
43.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
43.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
43.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
42.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
42.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
42.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
41.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
41.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
41.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
40.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
40.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
40.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
39.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
39.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
39.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
39.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
39.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
39.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
39.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
38.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
38.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
38.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
38.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
38.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
38.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
37.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
37.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
37.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
37.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
37.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
36.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
36.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
36.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
36.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
35.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
35.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
34.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
34.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
33.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
33.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
33.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
33.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
32.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
32.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
32.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
30.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
30.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
29.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
28.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
26.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
26.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
26.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
23.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
23.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
20.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TTC38 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
54.8
Number of samples
231
Samples
Sample
Description
TPM
DO50811
0 years, male, NA, stage:1, alive, 450 days
182.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
158.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
153.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
143.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
136.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
136.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
130.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
127.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
124.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
119.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
119.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
117.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
112.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
109.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
108.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
105.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
101.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
99.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
96.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
95.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
95.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
94.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
94.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
93.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
92.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
92.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
91.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
89.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
89.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
87.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
87.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
85.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
83.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
82.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
80.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
80.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
79.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
78.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
78.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
78.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
77.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
77.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
76.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
76.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
76.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
76.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
76.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
74.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
74.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
73.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
72.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
71.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
71.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
71.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
69.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
69.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
69.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
68.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
68.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
67.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
67.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
66.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
66.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
65.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
65.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
64.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
64.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
64.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
64.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
63.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
63.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
63.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
63.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
63.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
62.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
62.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
62.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
61.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
61.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
60.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
60.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
59.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
59.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
59.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
59.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
58.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
58.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
58.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
58.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
58.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
58.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
58.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
58.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
57.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
57.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
57.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
56.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
56.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
56.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
56.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
55.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
55.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
55.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
55.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
54.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
54.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
54.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
54.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
54.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
53.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
52.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
52.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
51.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
51.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
51.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
51.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
50.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
50.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
50.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
50.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
50.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
49.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
49.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
48.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
48.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
48.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
47.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
47.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
47.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
46.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
46.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
45.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
44.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
44.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
44.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
44.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
44.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
44.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
43.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
42.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
42.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
42.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
42.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
42.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
41.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
41.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
41.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
40.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
40.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
40.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
40.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
39.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
39.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
39.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
38.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
38.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
37.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
36.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
36.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
35.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
33.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
32.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
31.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
31.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
29.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
28.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
862
Normal
0.8
1022
Normal
0.7
698
Normal
0.7
358
Normal
0.7
742
Normal
0.7
342
Normal
0.7
128
Normal
0.7
376
Normal
0.7
426
Normal
0.7
186
Normal
0.7
666
Normal
0.6
172
Normal
0.6
1014
Normal
0.6
756
Normal
0.6
162
Normal
0.6
452
Normal
0.6
746
Normal
0.6
628
Normal
0.6
738
Normal
0.6
786
Normal
0.6
394
Normal
0.6
924
Normal
0.6
864
Normal
0.6
278
Normal
0.6
298
Normal
0.5
568
Normal
0.5
696
Normal
0.5
448
Normal
0.5
716
Normal
0.5
466
Normal
0.5
111
Normal
0.5
722
Normal
0.5
952
Normal
0.5
664
Normal
0.5
484
Normal
0.5
818
Normal
0.5
778
Normal
0.5
132
Normal
0.5
114
Normal
0.5
196
Normal
0.5
516
Normal
0.5
728
Normal
0.5
1032
Normal
0.5
228
Normal
0.5
1046
Normal
0.5
462
Normal
0.5
938
Normal
0.5
366
Normal
0.5
392
Normal
0.5
662
Normal
0.5
858
Normal
0.5
648
Normal
0.5
572
Normal
0.5
388
Normal
0.5
816
Normal
0.5
456
Normal
0.5
364
Normal
0.5
356
Normal
0.5
714
Normal
0.5
1026
Normal
0.5
944
Normal
0.5
912
Normal
0.4
744
Normal
0.4
331
Tumor
0.4
232
Normal
0.4
258
Normal
0.4
616
Normal
0.4
124
Normal
0.4
148
Normal
0.4
955
Tumor
0.4
332
Normal
0.4
636
Normal
0.4
222
Normal
0.4
422
Normal
0.4
136
Normal
0.4
386
Normal
0.4
956
Normal
0.4
564
Normal
0.4
113
Tumor
0.4
214
Normal
0.4
412
Normal
0.4
1028
Normal
0.4
272
Normal
0.4
354
Normal
0.4
488
Normal
0.4
112
Tumor
0.4
142
Normal
0.4
416
Normal
0.4
424
Normal
0.4
914
Normal
0.4
686
Normal
0.4
958
Normal
0.4
685
Tumor
0.4
528
Normal
0.4
314
Normal
0.4
852
Normal
0.4
344
Normal
0.4
918
Normal
0.4
1016
Normal
0.4
878
Normal
0.4
618
Normal
0.4
482
Normal
0.3
866
Normal
0.3
432
Normal
0.3
922
Normal
0.3
474
Normal
0.3
464
Normal
0.3
1027
Tumor
0.3
968
Normal
0.3
286
Normal
0.3
138
Normal
0.3
414
Normal
0.3
966
Normal
0.3
1042
Normal
0.3
494
Normal
0.3
328
Normal
0.3
472
Normal
0.3
558
Normal
0.3
284
Normal
0.3
147
Tumor
0.3
312
Normal
0.3
396
Normal
0.3
362
Normal
0.3
915
Tumor
0.3
534
Normal
0.3
212
Normal
0.3
468
Normal
0.3
546
Normal
0.3
672
Normal
0.3
518
Normal
0.3
982
Normal
0.3
882
Normal
0.3
642
Normal
0.3
218
Normal
0.3
954
Normal
0.3
884
Normal
0.3
465
Tumor
0.3
327
Tumor
0.3
976
Normal
0.3
368
Normal
0.3
984
Normal
0.3
146
Normal
0.3
126
Normal
0.3
352
Normal
0.2
446
Normal
0.2
874
Normal
0.2
428
Normal
0.2
262
Normal
0.2
964
Normal
0.2
721
Tumor
0.2
574
Normal
0.2
627
Tumor
0.2
916
Normal
0.2
127
Tumor
0.1
514
Normal
0.1
526
Normal
0.1
445
Tumor
0.1
554
Normal
0.1
723
Tumor
0.1
755
Tumor
0.1
188
Normal
0.1
745
Tumor
0.1
515
Tumor
0.1
268
Normal
0.1
978
Normal
0.1
517
Tumor
0.1
1041
Tumor
0.1
434
Normal
0.1
224
Normal
0.0
463
Tumor
0.0
635
Tumor
0.0
384
Normal
0.0
911
Tumor
0.0
285
Tumor
0.0
538
Normal
0.0
715
Tumor
0.0
617
Tumor
0.0
131
Tumor
0.0
777
Tumor
0.0
1045
Tumor
0.0
873
Tumor
0.0
478
Normal
0.0
615
Tumor
0.0
498
Normal
0.0
981
Tumor
0.0
261
Tumor
0.0
492
Normal
0.0
443
Tumor
-0.1
444
Normal
-0.1
436
Normal
-0.1
431
Tumor
-0.1
743
Tumor
-0.1
357
Tumor
-0.1
536
Normal
-0.1
393
Tumor
-0.1
524
Normal
-0.1
857
Tumor
-0.2
481
Tumor
-0.2
824
Normal
-0.2
665
Tumor
-0.2
423
Tumor
-0.2
195
Tumor
-0.2
192
Normal
-0.2
883
Tumor
-0.2
171
Tumor
-0.2
353
Tumor
-0.2
487
Tumor
-0.2
223
Tumor
-0.2
926
Normal
-0.2
868
Normal
-0.2
341
Tumor
-0.2
415
Tumor
-0.2
447
Tumor
-0.3
451
Tumor
-0.3
471
Tumor
-0.3
141
Tumor
-0.3
1044
Normal
-0.3
277
Tumor
-0.3
137
Tumor
-0.3
483
Tumor
-0.3
527
Tumor
-0.3
185
Tumor
-0.3
1021
Tumor
-0.3
727
Tumor
-0.3
433
Tumor
-0.3
867
Tumor
-0.3
641
Tumor
-0.3
1031
Tumor
-0.3
737
Tumor
-0.4
785
Tumor
-0.4
953
Tumor
-0.4
567
Tumor
-0.4
395
Tumor
-0.4
217
Tumor
-0.4
913
Tumor
-0.4
191
Tumor
-0.4
977
Tumor
-0.4
477
Tumor
-0.4
921
Tumor
-0.4
461
Tumor
-0.4
861
Tumor
-0.4
421
Tumor
-0.4
983
Tumor
-0.5
951
Tumor
-0.5
877
Tumor
-0.5
145
Tumor
-0.5
815
Tumor
-0.5
557
Tumor
-0.5
271
Tumor
-0.5
383
Tumor
-0.5
187
Tumor
-0.5
473
Tumor
-0.5
865
Tumor
-0.5
647
Tumor
-0.5
1025
Tumor
-0.5
523
Tumor
-0.6
363
Tumor
-0.6
221
Tumor
-0.6
963
Tumor
-0.6
881
Tumor
-0.6
713
Tumor
-0.6
297
Tumor
-0.6
231
Tumor
-0.6
123
Tumor
-0.6
1015
Tumor
-0.6
975
Tumor
-0.6
135
Tumor
-0.6
387
Tumor
-0.6
391
Tumor
-0.6
563
Tumor
-0.7
814
Normal
-0.7
267
Tumor
-0.7
937
Tumor
-0.7
257
Tumor
-0.7
161
Tumor
-0.7
425
Tumor
-0.7
943
Tumor
-0.7
313
Tumor
-0.7
1043
Tumor
-0.7
553
Tumor
-0.8
741
Tumor
-0.8
361
Tumor
-0.8
545
Tumor
-0.8
967
Tumor
-0.8
413
Tumor
-0.8
917
Tumor
-0.8
923
Tumor
-0.8
813
Tumor
-0.8
365
Tumor
-0.8
491
Tumor
-0.8
671
Tumor
-0.8
663
Tumor
-0.8
311
Tumor
-0.8
851
Tumor
-0.9
455
Tumor
-0.9
125
Tumor
-0.9
697
Tumor
-0.9
863
Tumor
-0.9
965
Tumor
-1.0
367
Tumor
-1.0
213
Tumor
-1.0
427
Tumor
-1.0
661
Tumor
-1.0
513
Tumor
-1.0
355
Tumor
-1.0
925
Tumor
-1.0
493
Tumor
-1.0
537
Tumor
-1.0
467
Tumor
-1.1
823
Tumor
-1.1
817
Tumor
-1.1
571
Tumor
-1.1
695
Tumor
-1.1
435
Tumor
-1.1
411
Tumor
-1.1
343
Tumor
-1.1
573
Tumor
-1.1
227
Tumor
-1.1
957
Tumor
-1.2
533
Tumor
-1.2
283
Tumor
-1.3
497
Tumor
-1.3
535
Tumor
-1.3
724
Normal
-1.3
525
Tumor
-1.3
351
Tumor
-1.3
375
Tumor
-1.4
385
Tumor
-1.4
1013
Tumor
-1.5
211
Tumor
-1.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
