MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.6 nTPM
HPA Brain:121.7 nTPM
GTEx:23.6 nTPM
FANTOM5:5.6 Scaled Tags Per Million
Pig:30.9 nTPM
Mouse:49.4 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 121.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.8
2219 Male, age 76, both hemispheres 158.5
2586 Male, age 75, left hemisphere 108.0
2019 Male, age 18, unknown 103.5
2666 Male, age 74, left hemisphere 99.5
2828 Female, age 72, unknown 88.5
1827 Male, age 72, unknown 85.6
1870 Female, age 42, unknown 65.2
2411 Female, age 72, unknown 64.7
1830 Male, age 51, unknown 61.1
1833 Male, age 53, unknown 53.2
Dorsal raphe nucleus
nTPM: 73.7
2298 Female, age 72, unknown 93.8
2047 Male, age 72, unknown 89.8
2750 Male, age 76, both hemispheres 66.2
1828 Male, age 53, unknown 63.8
2016 Female, age 72, unknown 55.1
Inferior colliculus
nTPM: 84.7
2097 Female, age 72, unknown 98.3
1890 Male, age 53, unknown 96.0
1848 Female, age 42, unknown 75.8
2849 Male, age 72, unknown 68.7
Median raphe nucleus
nTPM: 98.5
2220 Male, age 76, midline 98.5
Periaquaductal grey, anterior
nTPM: 121.7
2502 Female, age 75, unknown 155.3
1795 Male, age 51, unknown 117.3
1947 Male, age 18, unknown 92.5
Periaquaductal grey, dorsal
nTPM: 85.4
1840 Male, age 53, unknown 97.1
1831 Male, age 72, unknown 90.4
2464 Female, age 72, unknown 87.4
2850 Male, age 76, both hemispheres 66.8
Periaquaductal grey, lateral
nTPM: 71.3
2140 Male, age 76, both hemispheres 79.1
2053 Male, age 18, unknown 68.7
2272 Male, age 74, both hemispheres 65.9
Pretectal area
nTPM: 103.0
1816 Male, age 51, unknown 166.4
1944 Female, age 72, unknown 147.0
2007 Male, age 72, unknown 142.0
1817 Female, age 42, unknown 120.6
2667 Female, age 75, unknown 109.8
1815 Male, age 53, unknown 102.0
2224 Female, age 72, unknown 88.3
2316 Male, age 76, right hemisphere 74.7
2825 Male, age 18, unknown 70.0
2407 Male, age 75, both hemispheres 65.4
2273 Male, age 74, both hemispheres 46.7
Red nucleus
nTPM: 58.0
2785 Male, age 18, unknown 100.0
2584 Male, age 75, left hemisphere 85.0
2588 Male, age 74, left hemisphere 58.8
2227 Male, age 72, unknown 57.6
2503 Female, age 72, unknown 56.1
1954 Female, age 42, unknown 54.1
2725 Female, age 75, unknown 52.9
1904 Male, age 53, unknown 51.7
2769 Male, age 72, unknown 48.2
2823 Male, age 76, right hemisphere 48.0
1865 Male, age 51, unknown 44.9
1821 Female, age 72, unknown 38.1
Substantia nigra
nTPM: 77.6
2665 Male, age 74, both hemispheres 118.3
1889 Female, age 72, unknown 113.3
1941 Male, age 53, unknown 93.2
1916 Female, age 42, unknown 89.2
1851 Male, age 51, unknown 78.3
2241 Male, age 72, unknown 72.2
2590 Female, age 75, unknown 65.9
2699 Male, age 18, unknown 52.9
2409 Female, age 72, unknown 48.9
2583 Male, age 75, right hemisphere 44.0
Superior colliculus
nTPM: 91.5
2087 Female, age 72, unknown 143.2
2664 Male, age 75, both hemispheres 106.0
1796 Male, age 53, unknown 105.7
2261 Male, age 18, unknown 103.4
1895 Male, age 76, right hemisphere 101.7
2587 Male, age 74, left hemisphere 80.8
1839 Male, age 51, unknown 70.6
1913 Female, age 42, unknown 70.5
2668 Female, age 75, unknown 70.5
1995 Male, age 72, unknown 62.6
Ventral tegmental area
nTPM: 85.2
2218 Male, age 76, both hemispheres 104.0
1942 Male, age 51, unknown 100.5
1915 Female, age 42, unknown 81.2
2021 Male, age 53, unknown 78.1
2223 Female, age 72, unknown 73.9
2410 Female, age 72, unknown 73.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.6
Samples: 139

Max nTPM: 63.0
Min nTPM: 3.6
Std nTPM: 12.1
Median nTPM: 23.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 63.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 51.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 49.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 48.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 48.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 47.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 47.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 44.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 43.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 42.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 41.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.6
FF:10158-103A5 76 years, female 5.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.9
Samples: 4

Max nTPM: 30.9
Min nTPM: 5.4
Sample A Female 25.2
Sample B Female 13.9
Sample C Male 30.9
Sample D Male 5.4
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 67.3
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 15.2
Sample C Male 67.3
Sample D Male 37.2
Periaqueductal gray
nTPM: 15.3
Samples: 3

Max nTPM: 20.1
Min nTPM: 12.5
Sample B Female 13.4
Sample C Male 20.1
Sample D Male 12.5
Superior colliculi
nTPM: 26.1
Samples: 4

Max nTPM: 39.2
Min nTPM: 12.0
Sample A Female 22.9
Sample B Female 12.0
Sample C Male 39.2
Sample D Male 30.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 49.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.4
Samples: 4

Max nTPM: 54.8
Min nTPM: 43.7
Sample A Male 43.7
Sample B Male 48.5
Sample C Female 54.8
Sample D Female 50.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
73496947 Antisense, RP_051019_04_A10, Mouse strain C57BL/6J (56 days, male) 0.9

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