HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:95.8 nTPM
HPA Brain:315.7 nTPM
GTEx:95.8 nTPM
FANTOM5:78.3 Scaled Tags Per Million
Pig:54.6 nTPM
Mouse:101.1 nTPM
Allen mouse:3.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA016642Antibody HPA057112
Glial cells Not detectedHigh
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 315.7
Sample id Sample description nTPM
Hippocampus
nTPM: 283.8
2621 Female, age 67, right hemisphere 394.2
2148 Female, age 91, left hemisphere 348.0
1898 Male, age 80, left hemisphere 261.5
1911 Female, age 85, right hemisphere 258.0
1855 Male, age 76, left hemisphere 250.2
2529 Female, age 94, left hemisphere 190.9
Dentate gyrus
nTPM: 284.4
2531 Female, age 67, both hemispheres 389.8
1927 Female, age 91, both hemispheres 355.2
2528 Male, age 74, both hemispheres 263.6
2246 Female, age 85, both hemispheres 260.1
2010 Male, age 76, both hemispheres 240.3
2530 Female, age 94, left hemisphere 197.3
Entorhinal gyrus
nTPM: 247.8
2613 Female, age 94, left hemisphere 325.8
2686 Male, age 75, right hemisphere 297.4
2764 Male, age 80, right hemisphere 234.8
1938 Female, age 85, left hemisphere 234.0
1787 Male, age 76, left hemisphere 226.4
2117 Female, age 91, right hemisphere 168.4
Hippocampus, CA1
nTPM: 315.7
2749 Male, age 80, left hemisphere 434.7
2527 Male, age 74, both hemispheres 350.8
1873 Female, age 85, both hemispheres 277.3
2082 Female, age 91, right hemisphere 273.3
2045 Male, age 76, both hemispheres 242.4
Hippocampus, CA2
nTPM: 268.2
1963 Male, age 80, left hemisphere 337.0
1892 Male, age 76, both hemispheres 299.3
2249 Male, age 74, both hemispheres 282.0
2113 Female, age 91, right hemisphere 274.8
2437 Female, age 94, left hemisphere 244.3
1940 Female, age 85, left hemisphere 171.8
Hippocampus, CA3
nTPM: 309.6
2861 Female, age 67, both hemispheres 490.8
2137 Male, age 80, left hemisphere 414.5
2620 Female, age 94, left hemisphere 326.5
2436 Male, age 74, both hemispheres 230.1
1867 Male, age 76, both hemispheres 226.7
1891 Female, age 85, both hemispheres 168.9
Parahippocampal cortex
nTPM: 258.5
2622 Female, age 67, right hemisphere 352.4
2245 Female, age 91, both hemispheres 320.8
2693 Female, age 94, both hemispheres 306.3
2250 Female, age 67, right hemisphere 273.1
2692 Male, age 74, both hemispheres 254.9
1990 Female, age 91, right hemisphere 227.0
2018 Male, age 76, both hemispheres 219.9
2532 Female, age 72, left hemisphere 216.9
1933 Female, age 85, both hemispheres 212.7
1850 Male, age 80, both hemispheres 200.6
Perirhinal gyrus
nTPM: 240.7
1847 Female, age 91, left hemisphere 301.4
2521 Female, age 94, right hemisphere 279.4
2848 Male, age 76, right hemisphere 218.4
1794 Male, age 80, right hemisphere 217.2
1841 Female, age 85, right hemisphere 186.9
Subiculum
nTPM: 197.0
2729 Female, age 91, right hemisphere 227.0
2619 Male, age 74, both hemispheres 209.0
1901 Male, age 80, both hemispheres 208.6
1977 Female, age 85, both hemispheres 201.0
2438 Female, age 94, left hemisphere 179.6
2042 Male, age 76, both hemispheres 156.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 95.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 95.8
Samples: 197

Max nTPM: 271.5
Min nTPM: 1.6
Std nTPM: 51.7
Median nTPM: 95.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 271.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 234.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 215.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 201.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 199.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 198.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 197.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 197.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 197.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 196.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 195.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 78.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 78.3
FF:10169-103B7 60 years, female 83.0
FF:10153-102I9 76 years, female 73.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 54.6
Pig sample Sample description nTPM
Subiculum
nTPM: 49.3
Samples: 4

Max nTPM: 65.2
Min nTPM: 37.4
Sample A Female 65.2
Sample B Female 42.0
Sample C Male 52.4
Sample D Male 37.4
Dorsal hippocampus
nTPM: 49.6
Samples: 4

Max nTPM: 62.3
Min nTPM: 40.4
Sample A Female 54.9
Sample B Female 62.3
Sample C Male 40.4
Sample D Male 40.6
Entorhinal cortex
nTPM: 53.6
Samples: 4

Max nTPM: 62.9
Min nTPM: 47.3
Sample A Female 52.7
Sample B Female 47.3
Sample C Male 62.9
Sample D Male 51.5
Ventral hippocampus
nTPM: 54.6
Samples: 4

Max nTPM: 66.4
Min nTPM: 40.9
Sample A Female 45.4
Sample B Female 40.9
Sample C Male 66.4
Sample D Male 65.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 101.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 72.5
Samples: 4

Max nTPM: 83.5
Min nTPM: 66.9
Sample A Male 67.5
Sample B Male 66.9
Sample C Female 72.2
Sample D Female 83.5
Hippocampal formation
nTPM: 101.1
Samples: 4

Max nTPM: 124.6
Min nTPM: 80.2
Sample A Male 80.2
Sample B Male 116.2
Sample C Female 124.6
Sample D Female 83.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
73496947 Antisense, RP_051019_04_A10, Mouse strain C57BL/6J (56 days, male) 3.8

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