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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
21.9
nTPM
HPA Brain:
85.1
nTPM
GTEx:
21.9
nTPM
FANTOM5:
120.4
Scaled Tags Per Million
Pig:
17.6
nTPM
Mouse:
12.4
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
85.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 62.6
2666
Male, age 74, left hemisphere
91.2
2019
Male, age 18, unknown
86.9
2828
Female, age 72, unknown
68.3
1830
Male, age 51, unknown
67.8
2586
Male, age 75, left hemisphere
65.0
1833
Male, age 53, unknown
60.3
1827
Male, age 72, unknown
47.2
1870
Female, age 42, unknown
46.7
2411
Female, age 72, unknown
46.7
2219
Male, age 76, both hemispheres
45.7
Dorsal raphe nucleus nTPM: 65.8
2016
Female, age 72, unknown
77.9
1828
Male, age 53, unknown
67.7
2750
Male, age 76, both hemispheres
67.2
2047
Male, age 72, unknown
58.7
2298
Female, age 72, unknown
57.6
Inferior colliculus nTPM: 54.0
2097
Female, age 72, unknown
57.5
1890
Male, age 53, unknown
57.2
2849
Male, age 72, unknown
53.9
1848
Female, age 42, unknown
47.3
Median raphe nucleus nTPM: 63.9
2220
Male, age 76, midline
63.9
Periaquaductal grey, anterior nTPM: 53.0
1795
Male, age 51, unknown
55.1
1947
Male, age 18, unknown
52.1
2502
Female, age 75, unknown
51.6
Periaquaductal grey, dorsal nTPM: 66.4
2850
Male, age 76, both hemispheres
83.1
1831
Male, age 72, unknown
77.3
1840
Male, age 53, unknown
55.8
2464
Female, age 72, unknown
49.2
Periaquaductal grey, lateral nTPM: 70.8
2140
Male, age 76, both hemispheres
81.8
2272
Male, age 74, both hemispheres
66.5
2053
Male, age 18, unknown
64.2
Pretectal area nTPM: 68.1
2316
Male, age 76, right hemisphere
96.8
2407
Male, age 75, both hemispheres
89.0
1817
Female, age 42, unknown
78.7
2007
Male, age 72, unknown
74.5
1815
Male, age 53, unknown
71.4
2273
Male, age 74, both hemispheres
69.0
1944
Female, age 72, unknown
63.0
1816
Male, age 51, unknown
54.9
2825
Male, age 18, unknown
51.5
2667
Female, age 75, unknown
51.2
2224
Female, age 72, unknown
49.3
Red nucleus nTPM: 68.5
2584
Male, age 75, left hemisphere
88.1
1865
Male, age 51, unknown
83.4
1904
Male, age 53, unknown
80.4
2785
Male, age 18, unknown
78.4
2725
Female, age 75, unknown
69.3
2769
Male, age 72, unknown
67.0
1954
Female, age 42, unknown
66.0
2227
Male, age 72, unknown
64.0
2503
Female, age 72, unknown
63.3
1821
Female, age 72, unknown
54.4
2823
Male, age 76, right hemisphere
53.8
2588
Male, age 74, left hemisphere
53.7
Substantia nigra nTPM: 85.1
2665
Male, age 74, both hemispheres
119.9
2590
Female, age 75, unknown
104.6
2699
Male, age 18, unknown
98.4
2583
Male, age 75, right hemisphere
86.5
2409
Female, age 72, unknown
83.4
1851
Male, age 51, unknown
79.0
2241
Male, age 72, unknown
77.5
1941
Male, age 53, unknown
69.0
1889
Female, age 72, unknown
66.8
1916
Female, age 42, unknown
65.9
Superior colliculus nTPM: 64.0
2587
Male, age 74, left hemisphere
81.5
1913
Female, age 42, unknown
80.0
2664
Male, age 75, both hemispheres
77.0
1995
Male, age 72, unknown
76.7
2668
Female, age 75, unknown
64.9
2087
Female, age 72, unknown
63.8
1839
Male, age 51, unknown
54.6
1796
Male, age 53, unknown
49.5
1895
Male, age 76, right hemisphere
46.4
2261
Male, age 18, unknown
45.8
Ventral tegmental area nTPM: 71.4
2021
Male, age 53, unknown
90.1
1942
Male, age 51, unknown
72.4
2218
Male, age 76, both hemispheres
71.6
2410
Female, age 72, unknown
69.0
2223
Female, age 72, unknown
67.4
1915
Female, age 42, unknown
57.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 21.9
Samples: 139
Max nTPM: 69.4
Min nTPM: 4.6
Std nTPM: 11.5
Median nTPM: 19.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
69.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
68.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
61.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
60.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
53.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
52.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
52.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
48.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
39.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
38.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
38.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
36.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
35.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
35.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
32.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
32.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
32.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
32.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
31.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
30.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
29.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
28.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
28.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
27.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
27.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
27.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
27.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
26.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
26.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
26.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
26.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
26.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
25.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
25.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
24.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
24.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
24.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
24.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
24.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
24.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
23.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
23.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
23.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
22.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
22.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
22.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
22.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
22.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
21.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
21.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
21.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
21.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
21.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
21.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
21.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
20.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
20.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
20.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
20.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
20.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
20.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
20.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
20.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
20.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
20.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
20.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
20.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
20.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
19.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
19.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
19.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
19.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
19.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
19.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
19.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
19.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
18.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
18.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
18.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
18.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
18.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
17.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
17.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
17.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
17.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
17.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
17.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
17.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
17.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
17.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
17.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
16.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
16.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
16.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
16.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
16.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
16.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
16.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
16.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
16.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
15.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
15.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
15.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
15.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
15.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
15.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
14.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
14.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
14.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
14.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
14.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
14.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
13.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
12.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
12.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
12.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
12.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
12.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
11.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
11.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
11.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
11.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
11.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
11.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
11.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
11.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
11.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
10.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
10.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
10.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
9.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
9.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
9.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
8.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
8.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
8.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
7.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
5.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
4.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 12.4
Samples: 4
Max nTPM: 13.5
Min nTPM: 11.7
Sample A
Male
11.7
Sample B
Male
11.9
Sample C
Female
12.6
Sample D
Female
13.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.