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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
25.7
nTPM
HPA Brain:
52.3
nTPM
GTEx:
25.7
nTPM
FANTOM5:
34.9
Scaled Tags Per Million
Pig:
39.2
nTPM
Mouse:
61.0
nTPM
Allen mouse:
6.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA074550
Glial cells
Low
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 48.6
1898
Male, age 80, left hemisphere
64.6
2621
Female, age 67, right hemisphere
61.0
2148
Female, age 91, left hemisphere
48.7
1855
Male, age 76, left hemisphere
44.6
1911
Female, age 85, right hemisphere
38.8
2529
Female, age 94, left hemisphere
33.9
Dentate gyrus nTPM: 49.6
2530
Female, age 94, left hemisphere
70.3
1927
Female, age 91, both hemispheres
62.3
2010
Male, age 76, both hemispheres
46.5
2531
Female, age 67, both hemispheres
45.8
2528
Male, age 74, both hemispheres
43.1
2246
Female, age 85, both hemispheres
29.7
Entorhinal gyrus nTPM: 50.4
2613
Female, age 94, left hemisphere
84.9
2764
Male, age 80, right hemisphere
53.4
2686
Male, age 75, right hemisphere
53.0
1787
Male, age 76, left hemisphere
43.2
1938
Female, age 85, left hemisphere
42.6
2117
Female, age 91, right hemisphere
25.4
Hippocampus, CA1 nTPM: 51.3
2749
Male, age 80, left hemisphere
87.3
2527
Male, age 74, both hemispheres
58.2
1873
Female, age 85, both hemispheres
55.1
2045
Male, age 76, both hemispheres
29.9
2082
Female, age 91, right hemisphere
25.8
Hippocampus, CA2 nTPM: 47.2
2437
Female, age 94, left hemisphere
64.0
1963
Male, age 80, left hemisphere
58.6
1892
Male, age 76, both hemispheres
57.5
2249
Male, age 74, both hemispheres
48.7
2113
Female, age 91, right hemisphere
28.8
1940
Female, age 85, left hemisphere
25.6
Hippocampus, CA3 nTPM: 52.3
2861
Female, age 67, both hemispheres
69.5
2620
Female, age 94, left hemisphere
65.7
2137
Male, age 80, left hemisphere
62.0
1867
Male, age 76, both hemispheres
44.9
2436
Male, age 74, both hemispheres
37.1
1891
Female, age 85, both hemispheres
34.7
Parahippocampal cortex nTPM: 44.5
2622
Female, age 67, right hemisphere
64.4
2693
Female, age 94, both hemispheres
52.5
1990
Female, age 91, right hemisphere
48.5
2245
Female, age 91, both hemispheres
44.9
1850
Male, age 80, both hemispheres
43.4
1933
Female, age 85, both hemispheres
40.8
2692
Male, age 74, both hemispheres
40.7
2250
Female, age 67, right hemisphere
39.7
2532
Female, age 72, left hemisphere
36.5
2018
Male, age 76, both hemispheres
33.3
Perirhinal gyrus nTPM: 45.3
1847
Female, age 91, left hemisphere
54.1
2521
Female, age 94, right hemisphere
48.8
1794
Male, age 80, right hemisphere
44.4
2848
Male, age 76, right hemisphere
39.9
1841
Female, age 85, right hemisphere
39.4
Subiculum nTPM: 39.5
2438
Female, age 94, left hemisphere
51.3
1901
Male, age 80, both hemispheres
44.2
2619
Male, age 74, both hemispheres
41.1
1977
Female, age 85, both hemispheres
37.3
2729
Female, age 91, right hemisphere
34.1
2042
Male, age 76, both hemispheres
29.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
25.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 25.7
Samples: 197
Max nTPM: 70.5
Min nTPM: 1.2
Std nTPM: 14.7
Median nTPM: 24.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
70.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
66.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
65.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
59.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
57.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
55.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
52.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
52.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
51.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
50.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
50.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
50.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
50.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
48.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
48.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
47.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
47.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
46.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
46.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
46.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
45.6
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
45.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
45.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
44.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
42.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
42.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
42.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
41.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
41.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
41.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
41.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
41.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
41.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
40.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
40.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
40.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
39.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
39.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
39.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
39.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
38.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
38.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
38.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
37.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
37.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
36.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
35.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
35.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
35.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
35.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
35.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
35.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
35.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
34.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
34.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
34.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
34.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
33.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
33.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
32.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
32.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
32.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
32.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
32.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
32.2
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
32.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
31.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
31.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
31.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
30.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
30.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
30.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
30.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
30.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
29.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
29.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
29.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
29.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
29.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
29.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
29.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
29.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
28.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
28.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
27.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
26.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
26.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
26.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
26.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
25.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
25.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
25.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
25.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
24.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
24.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
24.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
24.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
24.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
24.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
24.2
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
24.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
23.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
23.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
23.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
23.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
23.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
22.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
22.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
22.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
22.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
22.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
22.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
21.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
21.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
20.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
20.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
20.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
20.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
19.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
19.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
19.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
19.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
19.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
19.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
18.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
18.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
18.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
18.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
18.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
18.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
18.3
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
17.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
17.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
16.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
16.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
16.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
16.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
16.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
16.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
15.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
15.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
15.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
15.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
15.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
14.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
14.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
14.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
14.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
13.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
13.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
13.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
12.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
12.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
12.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
11.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
11.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
11.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
11.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
10.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
10.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
10.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
10.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
10.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
10.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
9.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
9.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
9.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
9.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
9.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
8.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
8.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
8.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
8.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
7.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
7.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
7.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
7.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
6.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
6.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
6.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
6.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
5.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
5.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
5.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
5.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
4.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
4.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
4.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
4.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
4.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
3.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
3.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
3.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
3.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
2.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
1.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
1.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
61.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 44.8
Samples: 4
Max nTPM: 47.3
Min nTPM: 41.9
Sample A
Male
41.9
Sample B
Male
45.1
Sample C
Female
44.7
Sample D
Female
47.3
Hippocampal formation nTPM: 61.0
Samples: 4
Max nTPM: 67.4
Min nTPM: 50.6
Sample A
Male
50.6
Sample B
Male
67.4
Sample C
Female
65.9
Sample D
Female
60.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.