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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
22.2
nTPM
HPA Brain:
45.6
nTPM
GTEx:
22.2
nTPM
FANTOM5:
35.6
Scaled Tags Per Million
Pig:
45.9
nTPM
Mouse:
180.0
nTPM
Allen mouse:
13.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
45.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 35.0
2219
Male, age 76, both hemispheres
43.5
2411
Female, age 72, unknown
40.3
2019
Male, age 18, unknown
39.6
1827
Male, age 72, unknown
36.3
2666
Male, age 74, left hemisphere
35.9
2586
Male, age 75, left hemisphere
35.0
1870
Female, age 42, unknown
33.8
1833
Male, age 53, unknown
31.4
1830
Male, age 51, unknown
27.9
2828
Female, age 72, unknown
26.6
Dorsal raphe nucleus nTPM: 37.5
2298
Female, age 72, unknown
46.1
2750
Male, age 76, both hemispheres
40.9
1828
Male, age 53, unknown
37.8
2047
Male, age 72, unknown
37.7
2016
Female, age 72, unknown
25.0
Inferior colliculus nTPM: 32.8
2097
Female, age 72, unknown
40.2
1848
Female, age 42, unknown
33.0
2849
Male, age 72, unknown
29.3
1890
Male, age 53, unknown
28.5
Median raphe nucleus nTPM: 44.8
2220
Male, age 76, midline
44.8
Periaquaductal grey, anterior nTPM: 39.6
2502
Female, age 75, unknown
42.2
1947
Male, age 18, unknown
40.7
1795
Male, age 51, unknown
36.1
Periaquaductal grey, dorsal nTPM: 32.3
1840
Male, age 53, unknown
38.0
1831
Male, age 72, unknown
31.9
2464
Female, age 72, unknown
31.2
2850
Male, age 76, both hemispheres
28.0
Periaquaductal grey, lateral nTPM: 26.7
2053
Male, age 18, unknown
28.3
2272
Male, age 74, both hemispheres
26.3
2140
Male, age 76, both hemispheres
25.5
Pretectal area nTPM: 39.3
1816
Male, age 51, unknown
55.4
1944
Female, age 72, unknown
54.0
2007
Male, age 72, unknown
51.2
1817
Female, age 42, unknown
47.5
1815
Male, age 53, unknown
44.0
2224
Female, age 72, unknown
37.0
2667
Female, age 75, unknown
33.6
2825
Male, age 18, unknown
31.0
2407
Male, age 75, both hemispheres
26.8
2273
Male, age 74, both hemispheres
26.7
2316
Male, age 76, right hemisphere
24.9
Red nucleus nTPM: 30.0
1821
Female, age 72, unknown
37.7
2725
Female, age 75, unknown
34.7
2785
Male, age 18, unknown
34.6
2588
Male, age 74, left hemisphere
33.3
2584
Male, age 75, left hemisphere
33.0
1954
Female, age 42, unknown
28.4
1904
Male, age 53, unknown
27.2
2503
Female, age 72, unknown
27.0
2227
Male, age 72, unknown
26.4
2769
Male, age 72, unknown
26.3
2823
Male, age 76, right hemisphere
25.8
1865
Male, age 51, unknown
25.7
Substantia nigra nTPM: 45.6
1941
Male, age 53, unknown
58.3
2241
Male, age 72, unknown
57.1
1851
Male, age 51, unknown
53.8
1916
Female, age 42, unknown
52.5
2409
Female, age 72, unknown
48.8
1889
Female, age 72, unknown
47.4
2665
Male, age 74, both hemispheres
39.2
2699
Male, age 18, unknown
34.1
2583
Male, age 75, right hemisphere
32.3
2590
Female, age 75, unknown
32.0
Superior colliculus nTPM: 35.3
2668
Female, age 75, unknown
43.7
2087
Female, age 72, unknown
42.3
1895
Male, age 76, right hemisphere
39.3
2261
Male, age 18, unknown
38.2
1796
Male, age 53, unknown
37.0
2587
Male, age 74, left hemisphere
35.0
1839
Male, age 51, unknown
33.2
1913
Female, age 42, unknown
29.7
2664
Male, age 75, both hemispheres
27.9
1995
Male, age 72, unknown
26.3
Ventral tegmental area nTPM: 41.3
2218
Male, age 76, both hemispheres
54.6
2410
Female, age 72, unknown
52.5
1915
Female, age 42, unknown
41.7
1942
Male, age 51, unknown
37.3
2223
Female, age 72, unknown
34.0
2021
Male, age 53, unknown
27.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 22.2
Samples: 139
Max nTPM: 91.9
Min nTPM: 8.8
Std nTPM: 12.5
Median nTPM: 19.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
91.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
77.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
56.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
53.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
50.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
46.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
46.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
41.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
39.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
39.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
38.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
38.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
37.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
36.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
36.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
35.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
35.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
35.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
34.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
34.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
33.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
31.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
31.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
31.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
31.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
31.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
30.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
30.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
30.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
29.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
28.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
27.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
27.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
27.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
26.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
26.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
26.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
26.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
26.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
26.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
26.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
26.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
25.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
25.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
25.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
24.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
24.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
24.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
23.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
23.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
22.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
22.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
22.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
22.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
22.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
22.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
22.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
22.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
20.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
20.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
20.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
20.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
20.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
19.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
19.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
19.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
19.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
19.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
19.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
19.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
18.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
18.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
18.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
18.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
18.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
18.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
17.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
17.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
17.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
17.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
17.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
17.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
16.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
16.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
16.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
16.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
16.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
15.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
15.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
15.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
15.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
15.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
14.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
14.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
14.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
14.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
14.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
13.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
13.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
13.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
13.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
13.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
13.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
13.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
13.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
12.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
12.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
12.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
12.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
12.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
12.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
12.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
12.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
12.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
12.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
11.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
11.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
11.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
11.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
11.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
11.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
11.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
11.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
11.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
11.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
10.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
10.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
10.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
10.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
10.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
9.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
9.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
9.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
9.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
9.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
9.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
9.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
9.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
8.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
180.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 180.0
Samples: 4
Max nTPM: 192.2
Min nTPM: 160.0
Sample A
Male
160.0
Sample B
Male
183.7
Sample C
Female
192.2
Sample D
Female
184.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.