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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
30.1
nTPM
HPA Brain:
67.6
nTPM
GTEx:
30.1
nTPM
FANTOM5:
159.6
Scaled Tags Per Million
Pig:
63.4
nTPM
Mouse:
167.2
nTPM
Allen mouse:
20.3
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody CAB007751
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 56.3
1898
Male, age 80, left hemisphere
87.4
1855
Male, age 76, left hemisphere
63.3
2621
Female, age 67, right hemisphere
62.4
2148
Female, age 91, left hemisphere
45.0
1911
Female, age 85, right hemisphere
44.4
2529
Female, age 94, left hemisphere
35.2
Dentate gyrus nTPM: 56.7
1927
Female, age 91, both hemispheres
80.6
2010
Male, age 76, both hemispheres
74.2
2246
Female, age 85, both hemispheres
53.7
2530
Female, age 94, left hemisphere
47.1
2531
Female, age 67, both hemispheres
42.6
2528
Male, age 74, both hemispheres
42.0
Entorhinal gyrus nTPM: 44.2
1938
Female, age 85, left hemisphere
58.7
2764
Male, age 80, right hemisphere
52.1
1787
Male, age 76, left hemisphere
47.0
2613
Female, age 94, left hemisphere
45.6
2686
Male, age 75, right hemisphere
32.1
2117
Female, age 91, right hemisphere
29.8
Hippocampus, CA1 nTPM: 67.6
2749
Male, age 80, left hemisphere
137.6
1873
Female, age 85, both hemispheres
77.3
2527
Male, age 74, both hemispheres
47.0
2045
Male, age 76, both hemispheres
41.0
2082
Female, age 91, right hemisphere
35.0
Hippocampus, CA2 nTPM: 58.5
1963
Male, age 80, left hemisphere
100.9
1892
Male, age 76, both hemispheres
90.3
2249
Male, age 74, both hemispheres
45.7
1940
Female, age 85, left hemisphere
43.2
2437
Female, age 94, left hemisphere
36.8
2113
Female, age 91, right hemisphere
34.0
Hippocampus, CA3 nTPM: 58.0
2137
Male, age 80, left hemisphere
86.9
1867
Male, age 76, both hemispheres
62.7
2620
Female, age 94, left hemisphere
61.1
1891
Female, age 85, both hemispheres
46.5
2436
Male, age 74, both hemispheres
46.4
2861
Female, age 67, both hemispheres
44.6
Parahippocampal cortex nTPM: 46.8
1850
Male, age 80, both hemispheres
67.4
1990
Female, age 91, right hemisphere
53.8
2245
Female, age 91, both hemispheres
50.5
1933
Female, age 85, both hemispheres
49.9
2250
Female, age 67, right hemisphere
49.7
2532
Female, age 72, left hemisphere
47.8
2693
Female, age 94, both hemispheres
43.5
2018
Male, age 76, both hemispheres
36.6
2622
Female, age 67, right hemisphere
36.2
2692
Male, age 74, both hemispheres
33.0
Perirhinal gyrus nTPM: 63.7
1847
Female, age 91, left hemisphere
82.6
1841
Female, age 85, right hemisphere
65.9
1794
Male, age 80, right hemisphere
63.7
2521
Female, age 94, right hemisphere
58.4
2848
Male, age 76, right hemisphere
47.9
Subiculum nTPM: 42.4
1901
Male, age 80, both hemispheres
57.6
1977
Female, age 85, both hemispheres
51.7
2438
Female, age 94, left hemisphere
43.4
2042
Male, age 76, both hemispheres
37.2
2619
Male, age 74, both hemispheres
34.0
2729
Female, age 91, right hemisphere
30.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 30.1
Samples: 197
Max nTPM: 91.0
Min nTPM: 8.0
Std nTPM: 15.7
Median nTPM: 26.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
91.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
74.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
70.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
70.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
68.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
66.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
65.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
64.0
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
63.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
63.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
62.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
60.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
59.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
56.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
55.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
54.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
54.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
54.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
53.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
52.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
51.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
51.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
50.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
50.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
50.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
50.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
49.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
49.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
48.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
47.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
47.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
46.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
46.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
46.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
46.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
45.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
45.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
45.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
45.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
44.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
43.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
43.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
43.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
42.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
42.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
41.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
41.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
40.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
40.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
38.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
38.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
38.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
36.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
36.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
36.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
36.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
35.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
35.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
35.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
34.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
34.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
34.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
34.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
34.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
34.0
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
33.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
33.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
33.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
32.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
32.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
32.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
32.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
31.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
31.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
31.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
31.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
31.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
31.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
30.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
30.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
30.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
29.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
29.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
29.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
29.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
29.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
28.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
28.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
28.3
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
28.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
27.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
27.6
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
27.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
27.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
27.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
27.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
26.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
26.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
26.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
25.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
25.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
25.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
25.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
25.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
24.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
24.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
24.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
24.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
24.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
24.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
24.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
24.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
23.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
23.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
23.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
22.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
22.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
22.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
22.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
22.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
22.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
22.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
21.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
21.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
21.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
21.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
20.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
20.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
20.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
20.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
20.1
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
20.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
20.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
19.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
19.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
19.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
19.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
19.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
19.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
19.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
18.8
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
17.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
17.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
17.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
16.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
16.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
16.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
16.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
16.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
16.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
16.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
16.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
16.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
16.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
16.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
15.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
15.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
15.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
15.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
15.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
15.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
15.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
15.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
15.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
15.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
15.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
14.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
14.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
14.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
14.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
14.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
14.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
14.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
14.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
13.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
13.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
13.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
13.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
13.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
13.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
13.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
13.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
13.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
13.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
12.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
12.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
12.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
12.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
11.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
11.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
11.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
11.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
11.1
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
10.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
9.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
9.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
8.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
167.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 149.0
Samples: 4
Max nTPM: 172.4
Min nTPM: 133.0
Sample A
Male
133.0
Sample B
Male
145.2
Sample C
Female
145.5
Sample D
Female
172.4
Hippocampal formation nTPM: 167.3
Samples: 4
Max nTPM: 179.2
Min nTPM: 152.1
Sample A
Male
159.8
Sample B
Male
177.9
Sample C
Female
179.2
Sample D
Female
152.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.