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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNK2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 1.63
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.18
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
45%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
56%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
30.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNK2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 2.14
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.080
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
70%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
0%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
58.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
53.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
47.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
39.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
34.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
32.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
0.8
452
Normal
0.8
388
Normal
0.8
462
Normal
0.7
432
Normal
0.7
474
Normal
0.7
137
Tumor
0.7
472
Normal
0.7
817
Tumor
0.7
145
Tumor
0.7
138
Normal
0.6
443
Tumor
0.6
412
Normal
0.6
394
Normal
0.6
481
Tumor
0.6
446
Normal
0.6
392
Normal
0.6
396
Normal
0.6
414
Normal
0.5
222
Normal
0.5
196
Normal
0.5
912
Normal
0.5
857
Tumor
0.5
343
Tumor
0.5
737
Tumor
0.5
914
Normal
0.5
172
Normal
0.5
436
Normal
0.5
368
Normal
0.5
132
Normal
0.5
466
Normal
0.4
312
Normal
0.4
461
Tumor
0.4
386
Normal
0.4
482
Normal
0.4
391
Tumor
0.4
616
Normal
0.4
636
Normal
0.4
464
Normal
0.4
465
Tumor
0.4
357
Tumor
0.4
515
Tumor
0.4
141
Tumor
0.4
444
Normal
0.4
186
Normal
0.4
428
Normal
0.4
818
Normal
0.4
618
Normal
0.4
376
Normal
0.4
978
Normal
0.4
864
Normal
0.4
746
Normal
0.4
952
Normal
0.4
663
Tumor
0.4
327
Tumor
0.4
937
Tumor
0.4
434
Normal
0.4
564
Normal
0.4
574
Normal
0.4
148
Normal
0.4
628
Normal
0.4
146
Normal
0.4
468
Normal
0.4
778
Normal
0.4
477
Tumor
0.3
816
Normal
0.3
136
Normal
0.3
214
Normal
0.3
456
Normal
0.3
278
Normal
0.3
862
Normal
0.3
356
Normal
0.3
162
Normal
0.3
366
Normal
0.3
298
Normal
0.3
425
Tumor
0.3
756
Normal
0.3
135
Tumor
0.3
218
Normal
0.3
558
Normal
0.3
938
Normal
0.3
884
Normal
0.3
661
Tumor
0.3
258
Normal
0.3
228
Normal
0.3
364
Normal
0.3
627
Tumor
0.3
518
Normal
0.3
868
Normal
0.3
311
Tumor
0.3
498
Normal
0.3
852
Normal
0.3
416
Normal
0.3
866
Normal
0.3
863
Tumor
0.3
267
Tumor
0.3
195
Tumor
0.3
147
Tumor
0.3
568
Normal
0.2
171
Tumor
0.2
424
Normal
0.2
142
Normal
0.2
451
Tumor
0.2
332
Normal
0.2
471
Tumor
0.2
421
Tumor
0.2
384
Normal
0.2
642
Normal
0.2
445
Tumor
0.2
185
Tumor
0.2
232
Normal
0.2
328
Normal
0.2
858
Normal
0.2
672
Normal
0.2
944
Normal
0.2
426
Normal
0.2
563
Tumor
0.2
913
Tumor
0.2
956
Normal
0.2
882
Normal
0.2
554
Normal
0.2
823
Tumor
0.2
431
Tumor
0.2
926
Normal
0.2
943
Tumor
0.2
314
Normal
0.2
415
Tumor
0.2
188
Normal
0.2
664
Normal
0.2
224
Normal
0.2
221
Tumor
0.2
983
Tumor
0.2
573
Tumor
0.2
433
Tumor
0.2
1016
Normal
0.2
393
Tumor
0.2
1025
Tumor
0.2
494
Normal
0.1
284
Normal
0.1
341
Tumor
0.1
982
Normal
0.1
484
Normal
0.1
696
Normal
0.1
865
Tumor
0.1
662
Normal
0.1
272
Normal
0.1
362
Normal
0.1
874
Normal
0.1
755
Tumor
0.1
567
Tumor
0.1
861
Tumor
0.1
951
Tumor
0.1
286
Normal
0.1
572
Normal
0.1
352
Normal
0.1
1032
Normal
0.1
422
Normal
0.1
738
Normal
0.1
922
Normal
0.1
1041
Tumor
0.1
363
Tumor
0.1
1042
Normal
0.1
488
Normal
0.1
824
Normal
0.1
192
Normal
0.1
217
Tumor
0.1
354
Normal
0.1
526
Normal
0.1
514
Normal
0.1
187
Tumor
0.1
716
Normal
0.1
527
Tumor
0.1
553
Tumor
0.1
358
Normal
0.1
786
Normal
0.1
1014
Normal
0.1
365
Tumor
0.1
212
Normal
0.1
492
Normal
0.1
648
Normal
0.1
984
Normal
0.0
723
Tumor
0.0
777
Tumor
0.0
666
Normal
0.0
435
Tumor
0.0
1031
Tumor
0.0
262
Normal
0.0
918
Normal
0.0
231
Tumor
0.0
878
Normal
0.0
524
Normal
0.0
721
Tumor
0.0
728
Normal
0.0
367
Tumor
0.0
1044
Normal
0.0
277
Tumor
0.0
342
Normal
0.0
546
Normal
0.0
483
Tumor
0.0
686
Normal
0.0
533
Tumor
0.0
534
Normal
0.0
423
Tumor
0.0
964
Normal
0.0
448
Normal
0.0
722
Normal
0.0
283
Tumor
0.0
191
Tumor
0.0
545
Tumor
0.0
411
Tumor
0.0
981
Tumor
0.0
478
Normal
0.0
955
Tumor
0.0
261
Tumor
0.0
925
Tumor
-0.1
487
Tumor
-0.1
714
Normal
-0.1
344
Normal
-0.1
665
Tumor
-0.1
557
Tumor
-0.1
1046
Normal
-0.1
1022
Normal
-0.1
671
Tumor
-0.1
744
Normal
-0.1
268
Normal
-0.1
911
Tumor
-0.1
867
Tumor
-0.1
497
Tumor
-0.1
493
Tumor
-0.1
953
Tumor
-0.1
1027
Tumor
-0.1
617
Tumor
-0.1
413
Tumor
-0.1
1013
Tumor
-0.1
1028
Normal
-0.1
528
Normal
-0.1
977
Tumor
-0.1
1015
Tumor
-0.1
223
Tumor
-0.1
285
Tumor
-0.1
571
Tumor
-0.1
331
Tumor
-0.1
257
Tumor
-0.1
463
Tumor
-0.1
877
Tumor
-0.1
873
Tumor
-0.1
954
Normal
-0.1
641
Tumor
-0.1
538
Normal
-0.1
958
Normal
-0.1
1026
Normal
-0.1
745
Tumor
-0.1
227
Tumor
-0.1
1021
Tumor
-0.2
213
Tumor
-0.2
743
Tumor
-0.2
525
Tumor
-0.2
713
Tumor
-0.2
785
Tumor
-0.2
161
Tumor
-0.2
427
Tumor
-0.2
516
Normal
-0.2
353
Tumor
-0.2
615
Tumor
-0.2
916
Normal
-0.2
695
Tumor
-0.2
724
Normal
-0.2
513
Tumor
-0.2
467
Tumor
-0.2
383
Tumor
-0.2
727
Tumor
-0.2
923
Tumor
-0.2
976
Normal
-0.2
361
Tumor
-0.2
715
Tumor
-0.2
536
Normal
-0.3
271
Tumor
-0.3
647
Tumor
-0.3
537
Tumor
-0.3
968
Normal
-0.3
517
Tumor
-0.3
491
Tumor
-0.3
742
Normal
-0.3
395
Tumor
-0.3
915
Tumor
-0.3
447
Tumor
-0.3
966
Normal
-0.3
313
Tumor
-0.3
355
Tumor
-0.3
917
Tumor
-0.3
387
Tumor
-0.3
473
Tumor
-0.3
814
Normal
-0.3
1043
Tumor
-0.3
297
Tumor
-0.4
131
Tumor
-0.4
685
Tumor
-0.4
523
Tumor
-0.4
385
Tumor
-0.4
211
Tumor
-0.4
813
Tumor
-0.4
924
Normal
-0.4
881
Tumor
-0.4
375
Tumor
-0.4
741
Tumor
-0.4
635
Tumor
-0.4
921
Tumor
-0.4
975
Tumor
-0.4
455
Tumor
-0.5
815
Tumor
-0.5
698
Normal
-0.5
963
Tumor
-0.5
1045
Tumor
-0.5
883
Tumor
-0.6
957
Tumor
-0.6
967
Tumor
-0.7
697
Tumor
-0.7
535
Tumor
-0.7
851
Tumor
-0.8
965
Tumor
-0.9
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.