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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
24.9
nTPM
HPA Brain:
38.8
nTPM
GTEx:
24.9
nTPM
FANTOM5:
78.3
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
38.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 33.0
2666
Male, age 74, left hemisphere
57.6
1827
Male, age 72, unknown
39.4
2019
Male, age 18, unknown
37.5
2411
Female, age 72, unknown
33.5
2219
Male, age 76, both hemispheres
30.2
2828
Female, age 72, unknown
29.9
1870
Female, age 42, unknown
28.1
1833
Male, age 53, unknown
25.9
1830
Male, age 51, unknown
23.9
2586
Male, age 75, left hemisphere
23.8
Dorsal raphe nucleus nTPM: 30.4
2298
Female, age 72, unknown
37.7
1828
Male, age 53, unknown
33.9
2750
Male, age 76, both hemispheres
29.7
2047
Male, age 72, unknown
29.1
2016
Female, age 72, unknown
21.5
Inferior colliculus nTPM: 28.7
2097
Female, age 72, unknown
36.7
1848
Female, age 42, unknown
27.6
1890
Male, age 53, unknown
26.9
2849
Male, age 72, unknown
23.4
Median raphe nucleus nTPM: 38.8
2220
Male, age 76, midline
38.8
Periaquaductal grey, anterior nTPM: 31.1
1795
Male, age 51, unknown
34.7
1947
Male, age 18, unknown
30.3
2502
Female, age 75, unknown
28.3
Periaquaductal grey, dorsal nTPM: 23.7
1831
Male, age 72, unknown
27.2
2464
Female, age 72, unknown
24.7
1840
Male, age 53, unknown
23.6
2850
Male, age 76, both hemispheres
19.3
Periaquaductal grey, lateral nTPM: 22.9
2272
Male, age 74, both hemispheres
26.1
2053
Male, age 18, unknown
24.0
2140
Male, age 76, both hemispheres
18.6
Pretectal area nTPM: 35.4
1816
Male, age 51, unknown
54.6
1817
Female, age 42, unknown
53.1
2007
Male, age 72, unknown
50.8
1944
Female, age 72, unknown
43.4
1815
Male, age 53, unknown
36.6
2224
Female, age 72, unknown
34.2
2667
Female, age 75, unknown
26.6
2825
Male, age 18, unknown
26.4
2316
Male, age 76, right hemisphere
24.8
2407
Male, age 75, both hemispheres
19.8
2273
Male, age 74, both hemispheres
19.2
Red nucleus nTPM: 25.2
2588
Male, age 74, left hemisphere
34.8
2785
Male, age 18, unknown
33.5
1821
Female, age 72, unknown
30.7
2725
Female, age 75, unknown
28.7
2584
Male, age 75, left hemisphere
27.3
2823
Male, age 76, right hemisphere
26.0
1954
Female, age 42, unknown
21.6
2503
Female, age 72, unknown
21.0
2769
Male, age 72, unknown
20.1
1904
Male, age 53, unknown
19.9
2227
Male, age 72, unknown
19.8
1865
Male, age 51, unknown
19.4
Substantia nigra nTPM: 34.7
1916
Female, age 42, unknown
44.3
2241
Male, age 72, unknown
41.6
1889
Female, age 72, unknown
39.3
1941
Male, age 53, unknown
38.3
2409
Female, age 72, unknown
36.4
2665
Male, age 74, both hemispheres
35.7
1851
Male, age 51, unknown
34.0
2590
Female, age 75, unknown
29.5
2583
Male, age 75, right hemisphere
27.9
2699
Male, age 18, unknown
20.1
Superior colliculus nTPM: 28.3
2087
Female, age 72, unknown
40.1
2668
Female, age 75, unknown
37.0
2261
Male, age 18, unknown
35.0
1796
Male, age 53, unknown
33.0
1839
Male, age 51, unknown
28.1
2587
Male, age 74, left hemisphere
27.0
1895
Male, age 76, right hemisphere
24.5
1913
Female, age 42, unknown
23.0
1995
Male, age 72, unknown
19.0
2664
Male, age 75, both hemispheres
16.2
Ventral tegmental area nTPM: 31.1
1915
Female, age 42, unknown
35.9
2410
Female, age 72, unknown
34.8
2218
Male, age 76, both hemispheres
31.3
2021
Male, age 53, unknown
28.9
2223
Female, age 72, unknown
28.4
1942
Male, age 51, unknown
27.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 24.9
Samples: 139
Max nTPM: 126.3
Min nTPM: 2.5
Std nTPM: 18.0
Median nTPM: 19.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
126.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
75.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
71.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
70.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
69.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
68.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
65.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
63.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
56.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
55.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
54.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
49.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
49.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
45.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
44.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
43.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
42.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
42.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
40.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
40.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
40.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
40.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
40.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
39.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
38.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
37.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
37.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
37.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
36.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
35.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
35.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
34.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
34.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
33.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
33.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
32.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
32.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
31.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
31.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
30.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
30.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
28.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
28.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
27.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
27.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
27.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
27.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
26.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
26.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
26.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
26.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
26.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
25.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
25.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
24.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
24.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
23.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
22.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
22.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
22.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
22.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
21.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
21.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
21.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
21.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
20.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
19.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
19.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
19.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
19.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
19.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
18.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
18.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
18.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
18.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
18.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
18.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
17.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
17.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
17.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
17.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
17.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
17.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
16.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
16.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
16.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
16.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
16.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
16.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
15.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
15.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
15.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
15.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
15.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
15.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
14.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
14.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
14.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
12.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
12.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
12.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
12.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
12.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
12.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
12.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
11.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
11.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
11.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
11.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
11.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
10.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
10.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
10.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
10.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
10.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
10.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
9.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
9.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
9.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
9.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
9.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
8.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
8.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
8.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
8.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
8.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
8.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
7.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
7.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
7.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
7.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
6.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
6.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
6.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
5.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
5.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
5.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
5.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
2.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.