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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
26.0
nTPM
HPA Brain:
59.5
nTPM
GTEx:
26.0
nTPM
FANTOM5:
52.4
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA006539
Antibody CAB002763
Glial cells
Not detected
Not detected
Neuronal cells
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
59.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 38.4
1898
Male, age 80, left hemisphere
56.4
1855
Male, age 76, left hemisphere
40.1
2148
Female, age 91, left hemisphere
39.6
2621
Female, age 67, right hemisphere
36.0
1911
Female, age 85, right hemisphere
29.8
2529
Female, age 94, left hemisphere
28.7
Dentate gyrus nTPM: 48.0
1927
Female, age 91, both hemispheres
63.5
2010
Male, age 76, both hemispheres
62.9
2246
Female, age 85, both hemispheres
44.3
2530
Female, age 94, left hemisphere
42.0
2531
Female, age 67, both hemispheres
40.6
2528
Male, age 74, both hemispheres
34.5
Entorhinal gyrus nTPM: 38.0
2764
Male, age 80, right hemisphere
48.1
1938
Female, age 85, left hemisphere
46.3
2613
Female, age 94, left hemisphere
36.7
1787
Male, age 76, left hemisphere
36.6
2686
Male, age 75, right hemisphere
36.2
2117
Female, age 91, right hemisphere
24.0
Hippocampus, CA1 nTPM: 59.5
2749
Male, age 80, left hemisphere
92.0
2045
Male, age 76, both hemispheres
85.8
1873
Female, age 85, both hemispheres
51.3
2527
Male, age 74, both hemispheres
34.2
2082
Female, age 91, right hemisphere
33.9
Hippocampus, CA2 nTPM: 47.2
1892
Male, age 76, both hemispheres
83.5
1963
Male, age 80, left hemisphere
56.5
1940
Female, age 85, left hemisphere
41.9
2437
Female, age 94, left hemisphere
37.5
2249
Male, age 74, both hemispheres
33.1
2113
Female, age 91, right hemisphere
30.9
Hippocampus, CA3 nTPM: 56.3
1867
Male, age 76, both hemispheres
100.8
2137
Male, age 80, left hemisphere
81.3
2620
Female, age 94, left hemisphere
46.4
2861
Female, age 67, both hemispheres
39.6
1891
Female, age 85, both hemispheres
35.3
2436
Male, age 74, both hemispheres
34.3
Parahippocampal cortex nTPM: 40.7
2018
Male, age 76, both hemispheres
55.5
1850
Male, age 80, both hemispheres
53.3
1933
Female, age 85, both hemispheres
46.6
2245
Female, age 91, both hemispheres
42.9
1990
Female, age 91, right hemisphere
41.1
2693
Female, age 94, both hemispheres
39.8
2250
Female, age 67, right hemisphere
37.5
2532
Female, age 72, left hemisphere
37.4
2622
Female, age 67, right hemisphere
29.1
2692
Male, age 74, both hemispheres
23.8
Perirhinal gyrus nTPM: 50.4
1847
Female, age 91, left hemisphere
63.8
1794
Male, age 80, right hemisphere
52.1
1841
Female, age 85, right hemisphere
52.0
2521
Female, age 94, right hemisphere
50.3
2848
Male, age 76, right hemisphere
34.0
Subiculum nTPM: 38.2
2042
Male, age 76, both hemispheres
53.1
1901
Male, age 80, both hemispheres
46.7
1977
Female, age 85, both hemispheres
44.2
2438
Female, age 94, left hemisphere
30.0
2729
Female, age 91, right hemisphere
28.2
2619
Male, age 74, both hemispheres
27.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 26.0
Samples: 197
Max nTPM: 113.8
Min nTPM: 4.7
Std nTPM: 17.5
Median nTPM: 20.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
113.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
87.7
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
77.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
74.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
71.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
70.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
69.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
64.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
62.4
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
62.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
61.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
61.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
60.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
59.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
59.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
58.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
57.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
51.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
51.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
50.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
49.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
49.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
48.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
47.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
47.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
46.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
46.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
45.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
44.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
43.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
43.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
42.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
42.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
41.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
41.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
39.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
39.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
38.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
37.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
37.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
36.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
35.4
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
34.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
34.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
33.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
32.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
32.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
32.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
32.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
31.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
31.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
31.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
31.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
30.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
30.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
30.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
30.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
29.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
29.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
29.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
29.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
29.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
28.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
28.7
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
28.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
27.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
26.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
26.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
26.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
26.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
26.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
26.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
25.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
25.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
25.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
25.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
24.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
24.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
24.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
24.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
24.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
24.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
23.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
23.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
22.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
22.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
22.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
22.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
22.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
22.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
22.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
21.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
21.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
21.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
20.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
20.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
20.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
20.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
20.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
19.9
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
19.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
19.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
19.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
19.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
19.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
18.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
18.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
18.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
18.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
18.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
18.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
18.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
18.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
18.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
18.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
18.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
18.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
18.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
18.0
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
17.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
17.8
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
17.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
17.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
17.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
17.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
17.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
16.9
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
16.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
16.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
16.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
16.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
16.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
16.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
16.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
15.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
15.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
15.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
15.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
15.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
15.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
15.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
15.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
14.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
14.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
14.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
14.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
14.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
13.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
13.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
13.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
13.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
13.2
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
13.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
13.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
12.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
12.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
12.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
12.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
12.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
12.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
12.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
12.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
12.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
11.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
11.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
11.8
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
11.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
11.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
11.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
11.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
11.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
11.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
10.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
10.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
10.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
10.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
10.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
9.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
9.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
9.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
9.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
9.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
8.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
8.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
8.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
8.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
8.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
7.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
7.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
7.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
6.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
6.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
6.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
5.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
4.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
4.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
4.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.