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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THOC3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
104.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
81.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
72.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
70.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
68.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
67.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
67.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
61.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
57.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
54.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
52.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
51.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
51.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
50.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
49.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
47.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
46.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
46.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
46.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
45.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
45.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
45.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
43.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
43.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
43.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
42.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
41.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
41.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
41.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
41.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
40.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
40.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
39.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
39.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
39.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
39.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
39.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
39.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
38.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
38.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
38.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
38.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
38.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
36.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
36.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
36.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
35.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
35.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
35.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
35.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
35.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
35.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
35.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
35.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
34.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
34.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
34.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
33.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
33.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
33.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
32.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
32.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
32.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
32.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
32.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
31.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
31.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
31.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
31.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
30.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
30.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
30.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
29.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
28.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
28.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
28.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
28.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
27.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
27.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
26.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
25.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
25.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
24.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
24.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
24.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
19.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THOC3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.8
Number of samples
231
Samples
Sample
Description
TPM
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
1.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
951
Tumor
1.3
865
Tumor
1.1
1013
Tumor
1.1
527
Tumor
1.1
411
Tumor
1.0
497
Tumor
1.0
1021
Tumor
0.9
815
Tumor
0.9
965
Tumor
0.8
285
Tumor
0.8
431
Tumor
0.8
883
Tumor
0.8
523
Tumor
0.7
983
Tumor
0.7
685
Tumor
0.7
665
Tumor
0.6
557
Tumor
0.6
647
Tumor
0.6
471
Tumor
0.6
351
Tumor
0.6
473
Tumor
0.6
112
Tumor
0.6
743
Tumor
0.6
385
Tumor
0.6
413
Tumor
0.6
977
Tumor
0.5
967
Tumor
0.5
211
Tumor
0.5
465
Tumor
0.5
737
Tumor
0.5
313
Tumor
0.5
641
Tumor
0.5
663
Tumor
0.5
957
Tumor
0.5
537
Tumor
0.5
427
Tumor
0.4
925
Tumor
0.4
357
Tumor
0.4
695
Tumor
0.4
491
Tumor
0.4
425
Tumor
0.4
697
Tumor
0.4
1031
Tumor
0.4
567
Tumor
0.4
445
Tumor
0.4
921
Tumor
0.4
861
Tumor
0.4
727
Tumor
0.4
171
Tumor
0.3
147
Tumor
0.3
975
Tumor
0.3
277
Tumor
0.3
387
Tumor
0.3
433
Tumor
0.3
671
Tumor
0.3
873
Tumor
0.3
953
Tumor
0.3
533
Tumor
0.3
331
Tumor
0.3
483
Tumor
0.3
857
Tumor
0.3
267
Tumor
0.3
661
Tumor
0.3
231
Tumor
0.3
923
Tumor
0.3
213
Tumor
0.3
355
Tumor
0.3
383
Tumor
0.3
535
Tumor
0.2
777
Tumor
0.2
813
Tumor
0.2
545
Tumor
0.2
131
Tumor
0.2
937
Tumor
0.2
463
Tumor
0.2
713
Tumor
0.2
271
Tumor
0.2
851
Tumor
0.2
627
Tumor
0.2
573
Tumor
0.2
283
Tumor
0.2
443
Tumor
0.2
571
Tumor
0.2
715
Tumor
0.2
467
Tumor
0.2
724
Normal
0.2
881
Tumor
0.2
525
Tumor
0.2
447
Tumor
0.2
185
Tumor
0.2
395
Tumor
0.2
261
Tumor
0.2
515
Tumor
0.2
223
Tumor
0.2
785
Tumor
0.1
493
Tumor
0.1
341
Tumor
0.1
481
Tumor
0.1
877
Tumor
0.1
217
Tumor
0.1
817
Tumor
0.1
435
Tumor
0.1
343
Tumor
0.1
487
Tumor
0.1
913
Tumor
0.1
221
Tumor
0.1
227
Tumor
0.1
461
Tumor
0.1
745
Tumor
0.1
963
Tumor
0.1
455
Tumor
0.1
477
Tumor
0.1
123
Tumor
0.1
952
Normal
0.1
161
Tumor
0.1
1043
Tumor
0.1
513
Tumor
0.1
363
Tumor
0.1
721
Tumor
0.1
617
Tumor
0.1
297
Tumor
0.0
311
Tumor
0.0
867
Tumor
0.0
391
Tumor
0.0
127
Tumor
0.0
492
Normal
0.0
367
Tumor
0.0
741
Tumor
0.0
113
Tumor
0.0
1027
Tumor
0.0
755
Tumor
0.0
1041
Tumor
0.0
125
Tumor
0.0
141
Tumor
0.0
375
Tumor
0.0
823
Tumor
0.0
778
Normal
0.0
814
Normal
0.0
756
Normal
0.0
917
Tumor
0.0
635
Tumor
0.0
135
Tumor
0.0
472
Normal
0.0
915
Tumor
0.0
137
Tumor
0.0
1045
Tumor
-0.1
943
Tumor
-0.1
553
Tumor
-0.1
911
Tumor
-0.1
746
Normal
-0.1
353
Tumor
-0.1
1025
Tumor
-0.1
478
Normal
-0.1
866
Normal
-0.1
284
Normal
-0.1
456
Normal
-0.1
714
Normal
-0.1
536
Normal
-0.1
786
Normal
-0.1
517
Tumor
-0.1
466
Normal
-0.1
563
Tumor
-0.1
482
Normal
-0.1
421
Tumor
-0.1
423
Tumor
-0.1
187
Tumor
-0.1
393
Tumor
-0.1
172
Normal
-0.2
698
Normal
-0.2
554
Normal
-0.2
365
Tumor
-0.2
186
Normal
-0.2
538
Normal
-0.2
138
Normal
-0.2
298
Normal
-0.2
1026
Normal
-0.2
616
Normal
-0.2
145
Tumor
-0.2
434
Normal
-0.2
415
Tumor
-0.2
361
Tumor
-0.2
148
Normal
-0.2
232
Normal
-0.2
272
Normal
-0.2
146
Normal
-0.2
666
Normal
-0.2
738
Normal
-0.2
534
Normal
-0.2
1028
Normal
-0.2
968
Normal
-0.2
664
Normal
-0.2
342
Normal
-0.2
432
Normal
-0.2
1015
Tumor
-0.2
224
Normal
-0.2
966
Normal
-0.2
862
Normal
-0.2
1046
Normal
-0.2
257
Tumor
-0.2
436
Normal
-0.2
451
Tumor
-0.2
516
Normal
-0.2
384
Normal
-0.2
126
Normal
-0.2
214
Normal
-0.2
722
Normal
-0.2
327
Tumor
-0.2
258
Normal
-0.3
1032
Normal
-0.3
128
Normal
-0.3
368
Normal
-0.3
468
Normal
-0.3
955
Tumor
-0.3
728
Normal
-0.3
863
Tumor
-0.3
212
Normal
-0.3
1044
Normal
-0.3
926
Normal
-0.3
344
Normal
-0.3
192
Normal
-0.3
874
Normal
-0.3
111
Normal
-0.3
286
Normal
-0.3
518
Normal
-0.3
922
Normal
-0.3
412
Normal
-0.3
142
Normal
-0.3
526
Normal
-0.3
528
Normal
-0.3
332
Normal
-0.3
524
Normal
-0.3
268
Normal
-0.3
448
Normal
-0.3
1042
Normal
-0.3
218
Normal
-0.3
716
Normal
-0.3
938
Normal
-0.3
262
Normal
-0.3
981
Tumor
-0.3
444
Normal
-0.3
328
Normal
-0.3
124
Normal
-0.3
386
Normal
-0.3
558
Normal
-0.3
362
Normal
-0.3
742
Normal
-0.3
188
Normal
-0.3
958
Normal
-0.3
976
Normal
-0.3
686
Normal
-0.3
696
Normal
-0.3
964
Normal
-0.4
132
Normal
-0.4
228
Normal
-0.4
366
Normal
-0.4
136
Normal
-0.4
376
Normal
-0.4
824
Normal
-0.4
191
Tumor
-0.4
918
Normal
-0.4
1022
Normal
-0.4
916
Normal
-0.4
195
Tumor
-0.4
498
Normal
-0.4
514
Normal
-0.4
428
Normal
-0.4
546
Normal
-0.4
648
Normal
-0.4
868
Normal
-0.4
162
Normal
-0.4
416
Normal
-0.4
364
Normal
-0.4
314
Normal
-0.4
446
Normal
-0.4
356
Normal
-0.4
628
Normal
-0.4
615
Tumor
-0.4
462
Normal
-0.4
672
Normal
-0.4
426
Normal
-0.4
1016
Normal
-0.4
944
Normal
-0.4
278
Normal
-0.4
1014
Normal
-0.4
114
Normal
-0.4
568
Normal
-0.4
414
Normal
-0.4
864
Normal
-0.4
222
Normal
-0.4
394
Normal
-0.5
924
Normal
-0.5
474
Normal
-0.5
574
Normal
-0.5
464
Normal
-0.5
354
Normal
-0.5
452
Normal
-0.5
488
Normal
-0.5
358
Normal
-0.5
744
Normal
-0.5
494
Normal
-0.5
984
Normal
-0.5
312
Normal
-0.5
723
Tumor
-0.5
422
Normal
-0.5
818
Normal
-0.5
662
Normal
-0.5
816
Normal
-0.5
352
Normal
-0.6
196
Normal
-0.6
388
Normal
-0.6
954
Normal
-0.6
914
Normal
-0.6
396
Normal
-0.6
572
Normal
-0.6
858
Normal
-0.6
392
Normal
-0.6
982
Normal
-0.6
564
Normal
-0.6
852
Normal
-0.6
484
Normal
-0.6
636
Normal
-0.6
642
Normal
-0.6
978
Normal
-0.6
884
Normal
-0.6
956
Normal
-0.6
878
Normal
-0.7
912
Normal
-0.7
424
Normal
-0.7
618
Normal
-0.8
882
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
