We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
11.4
nTPM
HPA Brain:
17.2
nTPM
GTEx:
11.4
nTPM
FANTOM5:
24.7
Scaled Tags Per Million
Pig:
32.1
nTPM
Mouse:
21.3
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 15.4
2019
Male, age 18, unknown
17.4
2586
Male, age 75, left hemisphere
16.1
2666
Male, age 74, left hemisphere
16.1
1827
Male, age 72, unknown
15.8
2219
Male, age 76, both hemispheres
15.5
1833
Male, age 53, unknown
15.2
1830
Male, age 51, unknown
14.9
2411
Female, age 72, unknown
14.8
1870
Female, age 42, unknown
14.0
2828
Female, age 72, unknown
14.0
Dorsal raphe nucleus nTPM: 15.5
2047
Male, age 72, unknown
16.7
2298
Female, age 72, unknown
16.4
1828
Male, age 53, unknown
16.1
2750
Male, age 76, both hemispheres
15.0
2016
Female, age 72, unknown
13.0
Inferior colliculus nTPM: 14.2
1890
Male, age 53, unknown
15.3
1848
Female, age 42, unknown
14.0
2097
Female, age 72, unknown
13.9
2849
Male, age 72, unknown
13.8
Median raphe nucleus nTPM: 17.1
2220
Male, age 76, midline
17.1
Periaquaductal grey, anterior nTPM: 13.9
2502
Female, age 75, unknown
14.8
1795
Male, age 51, unknown
13.9
1947
Male, age 18, unknown
13.2
Periaquaductal grey, dorsal nTPM: 14.3
1840
Male, age 53, unknown
15.3
2464
Female, age 72, unknown
14.3
2850
Male, age 76, both hemispheres
14.1
1831
Male, age 72, unknown
13.3
Periaquaductal grey, lateral nTPM: 14.1
2140
Male, age 76, both hemispheres
15.1
2272
Male, age 74, both hemispheres
13.7
2053
Male, age 18, unknown
13.4
Pretectal area nTPM: 17.2
1816
Male, age 51, unknown
19.6
1944
Female, age 72, unknown
18.8
2667
Female, age 75, unknown
18.7
2007
Male, age 72, unknown
18.5
2407
Male, age 75, both hemispheres
18.4
1817
Female, age 42, unknown
18.1
2316
Male, age 76, right hemisphere
17.2
1815
Male, age 53, unknown
15.4
2825
Male, age 18, unknown
15.2
2224
Female, age 72, unknown
14.9
2273
Male, age 74, both hemispheres
14.6
Red nucleus nTPM: 15.5
2785
Male, age 18, unknown
18.3
2584
Male, age 75, left hemisphere
17.4
2725
Female, age 75, unknown
17.2
2588
Male, age 74, left hemisphere
16.5
2227
Male, age 72, unknown
16.1
2823
Male, age 76, right hemisphere
15.8
1865
Male, age 51, unknown
15.0
1821
Female, age 72, unknown
14.3
2769
Male, age 72, unknown
14.3
1954
Female, age 42, unknown
14.1
1904
Male, age 53, unknown
13.4
2503
Female, age 72, unknown
13.3
Substantia nigra nTPM: 16.8
2409
Female, age 72, unknown
20.1
1916
Female, age 42, unknown
19.7
2241
Male, age 72, unknown
18.4
1889
Female, age 72, unknown
17.1
1851
Male, age 51, unknown
17.0
2665
Male, age 74, both hemispheres
16.7
1941
Male, age 53, unknown
15.9
2583
Male, age 75, right hemisphere
15.2
2699
Male, age 18, unknown
14.8
2590
Female, age 75, unknown
12.5
Superior colliculus nTPM: 15.4
2087
Female, age 72, unknown
17.8
1796
Male, age 53, unknown
16.6
2261
Male, age 18, unknown
16.1
2668
Female, age 75, unknown
15.8
2664
Male, age 75, both hemispheres
15.6
2587
Male, age 74, left hemisphere
15.3
1913
Female, age 42, unknown
15.2
1895
Male, age 76, right hemisphere
14.7
1839
Male, age 51, unknown
14.3
1995
Male, age 72, unknown
13.0
Ventral tegmental area nTPM: 15.9
2218
Male, age 76, both hemispheres
18.6
1915
Female, age 42, unknown
17.2
2021
Male, age 53, unknown
16.5
1942
Male, age 51, unknown
15.4
2223
Female, age 72, unknown
14.4
2410
Female, age 72, unknown
13.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 11.4
Samples: 139
Max nTPM: 25.0
Min nTPM: 5.7
Std nTPM: 3.5
Median nTPM: 10.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
25.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
23.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
21.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
20.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
20.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
20.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
18.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
18.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
18.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
17.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
17.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
16.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
16.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
15.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
15.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
15.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
15.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
15.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
14.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
14.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
14.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
14.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
14.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
14.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
14.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
14.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
14.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
14.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
13.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
13.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
13.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
12.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
12.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
12.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
12.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
12.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
12.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
12.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
12.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
12.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
12.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
12.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
12.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
12.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
12.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
12.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
12.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
12.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
11.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
11.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
11.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
11.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
11.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
11.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
11.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
11.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
11.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
11.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
11.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
11.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
11.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
11.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
11.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
11.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
11.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
11.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
11.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
10.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
10.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
10.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
10.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
10.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
10.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
10.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
10.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
10.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
10.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
10.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
10.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
10.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
10.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
10.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
10.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
9.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
9.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
9.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
9.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
9.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
9.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
9.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
9.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
9.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
9.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
9.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
9.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
9.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
9.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
9.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
9.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
9.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
9.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
9.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
9.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
9.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
9.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
8.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
8.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
8.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
8.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
8.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
8.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
8.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
8.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
8.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
8.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
8.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
8.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
8.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
8.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
8.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
7.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
7.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
7.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
7.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
7.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
7.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
7.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
7.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
7.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
7.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
7.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
7.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
7.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
7.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
6.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
6.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
6.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
6.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
5.7
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 21.3
Samples: 4
Max nTPM: 22.4
Min nTPM: 20.4
Sample A
Male
22.4
Sample B
Male
20.4
Sample C
Female
22.0
Sample D
Female
20.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.