We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
18.1
nTPM
HPA Brain:
16.5
nTPM
GTEx:
18.1
nTPM
FANTOM5:
42.0
Scaled Tags Per Million
Pig:
47.4
nTPM
Mouse:
13.7
nTPM
Allen mouse:
0.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 3.5
1830
Male, age 51, unknown
5.3
2019
Male, age 18, unknown
5.0
2828
Female, age 72, unknown
4.8
1833
Male, age 53, unknown
4.7
2411
Female, age 72, unknown
4.2
1870
Female, age 42, unknown
2.9
2666
Male, age 74, left hemisphere
2.9
1827
Male, age 72, unknown
2.3
2586
Male, age 75, left hemisphere
1.5
2219
Male, age 76, both hemispheres
1.0
Dorsal raphe nucleus nTPM: 16.5
2298
Female, age 72, unknown
28.6
2016
Female, age 72, unknown
22.9
2047
Male, age 72, unknown
13.0
1828
Male, age 53, unknown
12.9
2750
Male, age 76, both hemispheres
5.2
Inferior colliculus nTPM: 4.9
2097
Female, age 72, unknown
6.6
1890
Male, age 53, unknown
5.2
1848
Female, age 42, unknown
4.1
2849
Male, age 72, unknown
3.7
Median raphe nucleus nTPM: 13.3
2220
Male, age 76, midline
13.3
Periaquaductal grey, anterior nTPM: 10.6
1795
Male, age 51, unknown
18.1
2502
Female, age 75, unknown
7.6
1947
Male, age 18, unknown
6.2
Periaquaductal grey, dorsal nTPM: 12.1
1831
Male, age 72, unknown
17.4
2850
Male, age 76, both hemispheres
15.1
1840
Male, age 53, unknown
9.0
2464
Female, age 72, unknown
7.0
Periaquaductal grey, lateral nTPM: 14.3
2272
Male, age 74, both hemispheres
21.4
2053
Male, age 18, unknown
10.8
2140
Male, age 76, both hemispheres
10.5
Pretectal area nTPM: 6.9
2224
Female, age 72, unknown
21.9
2273
Male, age 74, both hemispheres
16.5
2825
Male, age 18, unknown
7.5
2407
Male, age 75, both hemispheres
5.4
2316
Male, age 76, right hemisphere
5.1
2667
Female, age 75, unknown
4.6
1815
Male, age 53, unknown
3.6
1944
Female, age 72, unknown
3.5
1817
Female, age 42, unknown
3.3
1816
Male, age 51, unknown
2.2
2007
Male, age 72, unknown
1.7
Red nucleus nTPM: 5.3
1821
Female, age 72, unknown
9.0
2725
Female, age 75, unknown
7.0
2503
Female, age 72, unknown
6.2
2823
Male, age 76, right hemisphere
5.9
1904
Male, age 53, unknown
5.5
1865
Male, age 51, unknown
5.1
2588
Male, age 74, left hemisphere
5.0
2785
Male, age 18, unknown
5.0
1954
Female, age 42, unknown
3.8
2769
Male, age 72, unknown
3.8
2584
Male, age 75, left hemisphere
3.4
2227
Male, age 72, unknown
3.3
Substantia nigra nTPM: 7.1
2590
Female, age 75, unknown
12.5
2409
Female, age 72, unknown
9.2
2699
Male, age 18, unknown
9.2
2665
Male, age 74, both hemispheres
8.4
1941
Male, age 53, unknown
6.8
1851
Male, age 51, unknown
6.6
2241
Male, age 72, unknown
6.2
2583
Male, age 75, right hemisphere
4.6
1916
Female, age 42, unknown
3.6
1889
Female, age 72, unknown
3.4
Superior colliculus nTPM: 8.3
1995
Male, age 72, unknown
34.3
1913
Female, age 42, unknown
11.2
2587
Male, age 74, left hemisphere
10.1
2087
Female, age 72, unknown
6.6
1796
Male, age 53, unknown
4.4
1839
Male, age 51, unknown
3.8
2261
Male, age 18, unknown
3.8
2664
Male, age 75, both hemispheres
3.1
2668
Female, age 75, unknown
3.1
1895
Male, age 76, right hemisphere
2.3
Ventral tegmental area nTPM: 9.7
2021
Male, age 53, unknown
14.7
2223
Female, age 72, unknown
10.9
1942
Male, age 51, unknown
9.7
1915
Female, age 42, unknown
8.8
2218
Male, age 76, both hemispheres
8.0
2410
Female, age 72, unknown
6.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 18.1
Samples: 139
Max nTPM: 113.4
Min nTPM: 0.1
Std nTPM: 20.3
Median nTPM: 10.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
113.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
112.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
111.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
68.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
67.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
64.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
59.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
57.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
51.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
50.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
45.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
45.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
44.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
37.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
36.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
34.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
34.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
34.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
33.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
32.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
32.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
32.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
31.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
30.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
30.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
29.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
29.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
29.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
28.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
28.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
28.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
25.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
25.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
25.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
25.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
24.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
23.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
23.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
22.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
22.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
22.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
21.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
20.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
20.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
20.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
19.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
19.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
19.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
19.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
18.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
18.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
18.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
17.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
17.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
16.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
16.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
14.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
14.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
13.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
13.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
12.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
12.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
12.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
11.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
11.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
11.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
11.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
11.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
11.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
10.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
10.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
10.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
10.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
10.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
9.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
9.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
9.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
8.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
8.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
8.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
8.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
7.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
7.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
7.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
7.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
7.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
7.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
7.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
7.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
7.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
6.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
6.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
6.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
6.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
6.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
6.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
6.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
6.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
6.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
5.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
5.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
5.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
5.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
5.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
4.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
4.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
4.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
4.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
4.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
4.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
3.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
3.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
3.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
3.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
3.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
3.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
3.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
3.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
3.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
3.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
3.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
2.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
2.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
2.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
2.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
2.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
2.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
2.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
2.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
2.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
1.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
1.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
0.1
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 13.7
Samples: 4
Max nTPM: 16.6
Min nTPM: 11.6
Sample A
Male
13.3
Sample B
Male
13.3
Sample C
Female
16.6
Sample D
Female
11.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.