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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
368.1
nTPM
HPA Brain:
639.7
nTPM
GTEx:
368.1
nTPM
FANTOM5:
1491.2
Scaled Tags Per Million
Pig:
723.0
nTPM
Mouse:
425.5
nTPM
Allen mouse:
8.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
639.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 525.5
1870
Female, age 42, unknown
701.3
2019
Male, age 18, unknown
634.5
2411
Female, age 72, unknown
614.5
2828
Female, age 72, unknown
608.5
1833
Male, age 53, unknown
572.5
1830
Male, age 51, unknown
568.3
1827
Male, age 72, unknown
441.6
2219
Male, age 76, both hemispheres
382.0
2586
Male, age 75, left hemisphere
380.0
2666
Male, age 74, left hemisphere
352.3
Dorsal raphe nucleus nTPM: 551.1
2750
Male, age 76, both hemispheres
704.0
2016
Female, age 72, unknown
603.0
2298
Female, age 72, unknown
568.4
1828
Male, age 53, unknown
461.9
2047
Male, age 72, unknown
418.1
Inferior colliculus nTPM: 427.5
2097
Female, age 72, unknown
450.0
1890
Male, age 53, unknown
449.7
1848
Female, age 42, unknown
446.5
2849
Male, age 72, unknown
364.1
Median raphe nucleus nTPM: 420.3
2220
Male, age 76, midline
420.3
Periaquaductal grey, anterior nTPM: 445.7
2502
Female, age 75, unknown
481.0
1795
Male, age 51, unknown
429.2
1947
Male, age 18, unknown
427.0
Periaquaductal grey, dorsal nTPM: 433.2
2464
Female, age 72, unknown
472.2
2850
Male, age 76, both hemispheres
443.3
1831
Male, age 72, unknown
431.3
1840
Male, age 53, unknown
385.8
Periaquaductal grey, lateral nTPM: 461.3
2053
Male, age 18, unknown
486.1
2272
Male, age 74, both hemispheres
464.6
2140
Male, age 76, both hemispheres
433.2
Pretectal area nTPM: 461.5
2273
Male, age 74, both hemispheres
638.0
2316
Male, age 76, right hemisphere
564.7
2407
Male, age 75, both hemispheres
529.5
2667
Female, age 75, unknown
515.6
1815
Male, age 53, unknown
490.1
2224
Female, age 72, unknown
461.5
2825
Male, age 18, unknown
429.8
1817
Female, age 42, unknown
423.6
2007
Male, age 72, unknown
381.7
1944
Female, age 72, unknown
331.0
1816
Male, age 51, unknown
311.3
Red nucleus nTPM: 639.7
1904
Male, age 53, unknown
793.7
2227
Male, age 72, unknown
774.4
2769
Male, age 72, unknown
761.9
1865
Male, age 51, unknown
745.5
1821
Female, age 72, unknown
744.4
1954
Female, age 42, unknown
691.8
2823
Male, age 76, right hemisphere
669.4
2785
Male, age 18, unknown
647.9
2503
Female, age 72, unknown
641.5
2588
Male, age 74, left hemisphere
420.1
2725
Female, age 75, unknown
411.3
2584
Male, age 75, left hemisphere
374.2
Substantia nigra nTPM: 426.8
1851
Male, age 51, unknown
507.4
2699
Male, age 18, unknown
479.5
2590
Female, age 75, unknown
455.7
2583
Male, age 75, right hemisphere
449.2
1889
Female, age 72, unknown
446.8
2409
Female, age 72, unknown
446.4
1916
Female, age 42, unknown
400.5
1941
Male, age 53, unknown
399.9
2241
Male, age 72, unknown
394.4
2665
Male, age 74, both hemispheres
288.0
Superior colliculus nTPM: 506.5
1913
Female, age 42, unknown
721.6
1995
Male, age 72, unknown
715.8
2668
Female, age 75, unknown
558.9
2587
Male, age 74, left hemisphere
519.6
1895
Male, age 76, right hemisphere
479.4
1839
Male, age 51, unknown
467.3
2664
Male, age 75, both hemispheres
435.1
1796
Male, age 53, unknown
419.2
2087
Female, age 72, unknown
400.5
2261
Male, age 18, unknown
348.0
Ventral tegmental area nTPM: 526.2
2223
Female, age 72, unknown
728.2
2410
Female, age 72, unknown
531.3
2021
Male, age 53, unknown
514.9
1942
Male, age 51, unknown
512.5
1915
Female, age 42, unknown
435.6
2218
Male, age 76, both hemispheres
434.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
368.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 368.1
Samples: 139
Max nTPM: 805.6
Min nTPM: 111.5
Std nTPM: 132.6
Median nTPM: 338.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
805.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
793.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
762.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
761.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
735.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
695.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
673.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
658.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
574.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
574.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
566.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
563.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
562.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
560.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
556.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
546.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
534.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
527.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
522.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
519.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
504.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
501.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
496.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
463.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
460.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
456.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
449.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
443.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
443.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
439.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
435.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
434.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
430.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
426.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
425.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
425.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
419.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
411.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
409.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
407.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
404.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
403.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
397.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
395.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
392.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
390.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
387.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
384.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
384.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
382.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
379.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
374.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
373.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
372.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
372.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
366.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
362.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
359.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
359.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
355.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
354.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
352.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
347.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
346.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
346.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
343.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
342.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
342.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
342.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
338.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
337.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
337.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
336.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
335.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
333.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
331.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
329.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
326.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
325.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
324.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
322.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
320.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
320.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
314.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
312.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
312.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
309.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
309.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
308.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
307.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
306.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
302.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
302.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
297.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
292.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
289.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
289.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
289.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
286.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
286.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
282.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
282.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
279.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
277.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
277.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
276.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
271.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
270.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
270.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
269.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
268.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
266.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
264.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
260.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
259.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
255.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
253.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
243.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
243.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
239.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
237.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
236.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
234.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
234.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
232.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
231.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
231.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
230.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
225.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
222.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
219.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
216.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
216.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
215.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
200.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
186.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
173.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
168.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
111.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
425.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 425.5
Samples: 4
Max nTPM: 432.3
Min nTPM: 419.9
Sample A
Male
426.7
Sample B
Male
423.0
Sample C
Female
432.3
Sample D
Female
419.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.