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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
391.6
nTPM
HPA Brain:
632.8
nTPM
GTEx:
391.6
nTPM
FANTOM5:
1267.7
Scaled Tags Per Million
Pig:
729.2
nTPM
Mouse:
696.1
nTPM
Allen mouse:
19.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA002913
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
632.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 615.6
1898
Male, age 80, left hemisphere
687.3
1911
Female, age 85, right hemisphere
653.3
1855
Male, age 76, left hemisphere
632.3
2529
Female, age 94, left hemisphere
628.2
2148
Female, age 91, left hemisphere
568.7
2621
Female, age 67, right hemisphere
523.9
Dentate gyrus nTPM: 571.7
2010
Male, age 76, both hemispheres
712.2
2528
Male, age 74, both hemispheres
698.8
2530
Female, age 94, left hemisphere
569.2
2246
Female, age 85, both hemispheres
544.4
1927
Female, age 91, both hemispheres
493.0
2531
Female, age 67, both hemispheres
412.6
Entorhinal gyrus nTPM: 474.2
2117
Female, age 91, right hemisphere
744.4
1938
Female, age 85, left hemisphere
546.6
2764
Male, age 80, right hemisphere
477.7
1787
Male, age 76, left hemisphere
424.8
2686
Male, age 75, right hemisphere
338.6
2613
Female, age 94, left hemisphere
312.8
Hippocampus, CA1 nTPM: 632.8
2749
Male, age 80, left hemisphere
747.6
1873
Female, age 85, both hemispheres
699.7
2527
Male, age 74, both hemispheres
627.8
2045
Male, age 76, both hemispheres
593.8
2082
Female, age 91, right hemisphere
495.3
Hippocampus, CA2 nTPM: 584.5
1963
Male, age 80, left hemisphere
746.5
2249
Male, age 74, both hemispheres
718.5
1892
Male, age 76, both hemispheres
566.7
2113
Female, age 91, right hemisphere
557.8
1940
Female, age 85, left hemisphere
496.7
2437
Female, age 94, left hemisphere
420.7
Hippocampus, CA3 nTPM: 538.3
1891
Female, age 85, both hemispheres
675.7
2137
Male, age 80, left hemisphere
592.3
1867
Male, age 76, both hemispheres
575.2
2436
Male, age 74, both hemispheres
507.4
2620
Female, age 94, left hemisphere
473.9
2861
Female, age 67, both hemispheres
405.4
Parahippocampal cortex nTPM: 473.3
1933
Female, age 85, both hemispheres
591.3
2250
Female, age 67, right hemisphere
555.4
2018
Male, age 76, both hemispheres
547.7
2692
Male, age 74, both hemispheres
466.3
1990
Female, age 91, right hemisphere
463.8
2245
Female, age 91, both hemispheres
450.6
2532
Female, age 72, left hemisphere
447.9
1850
Male, age 80, both hemispheres
446.5
2693
Female, age 94, both hemispheres
395.2
2622
Female, age 67, right hemisphere
368.5
Perirhinal gyrus nTPM: 430.6
1794
Male, age 80, right hemisphere
447.0
1847
Female, age 91, left hemisphere
446.9
1841
Female, age 85, right hemisphere
441.7
2521
Female, age 94, right hemisphere
431.8
2848
Male, age 76, right hemisphere
385.7
Subiculum nTPM: 586.5
2042
Male, age 76, both hemispheres
727.5
2729
Female, age 91, right hemisphere
672.2
1901
Male, age 80, both hemispheres
628.5
1977
Female, age 85, both hemispheres
583.8
2619
Male, age 74, both hemispheres
504.9
2438
Female, age 94, left hemisphere
401.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
391.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 391.6
Samples: 197
Max nTPM: 825.9
Min nTPM: 52.0
Std nTPM: 105.4
Median nTPM: 377.4
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
825.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
650.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
637.8
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
620.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
618.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
606.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
606.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
596.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
594.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
579.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
578.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
573.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
566.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
562.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
553.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
551.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
549.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
549.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
543.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
540.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
529.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
525.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
520.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
517.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
515.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
513.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
511.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
510.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
508.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
501.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
497.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
491.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
490.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
487.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
486.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
485.8
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
483.7
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
479.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
470.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
470.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
469.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
468.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
467.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
467.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
466.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
463.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
463.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
460.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
459.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
456.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
455.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
454.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
446.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
445.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
444.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
442.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
440.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
440.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
440.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
439.9
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
439.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
439.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
436.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
436.2
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
436.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
429.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
423.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
422.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
420.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
419.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
419.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
414.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
408.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
408.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
407.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
407.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
405.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
402.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
401.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
397.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
397.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
397.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
396.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
396.0
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
395.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
393.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
390.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
390.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
389.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
389.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
388.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
386.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
386.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
386.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
382.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
382.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
380.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
378.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
377.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
377.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
376.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
375.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
374.5
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
374.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
374.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
372.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
372.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
371.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
368.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
368.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
366.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
363.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
360.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
357.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
357.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
357.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
356.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
355.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
355.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
354.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
351.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
351.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
350.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
349.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
348.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
346.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
344.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
341.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
340.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
339.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
339.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
339.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
337.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
336.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
335.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
334.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
334.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
334.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
333.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
332.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
328.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
328.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
327.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
327.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
324.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
324.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
322.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
321.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
319.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
318.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
318.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
317.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
315.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
315.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
313.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
310.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
309.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
308.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
306.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
305.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
304.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
304.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
304.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
303.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
302.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
301.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
298.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
296.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
295.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
294.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
293.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
292.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
286.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
281.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
281.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
279.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
270.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
270.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
270.2
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
266.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
264.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
261.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
258.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
257.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
255.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
255.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
250.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
242.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
233.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
232.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
222.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
217.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
212.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
206.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
182.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
119.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
52.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
696.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 635.0
Samples: 4
Max nTPM: 652.7
Min nTPM: 602.3
Sample A
Male
649.6
Sample B
Male
635.4
Sample C
Female
652.7
Sample D
Female
602.3
Hippocampal formation nTPM: 696.1
Samples: 4
Max nTPM: 746.7
Min nTPM: 632.3
Sample A
Male
746.7
Sample B
Male
697.5
Sample C
Female
708.0
Sample D
Female
632.3
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.