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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
16.6
nTPM
HPA Brain:
44.8
nTPM
GTEx:
16.6
nTPM
FANTOM5:
90.9
Scaled Tags Per Million
Pig:
171.5
nTPM
Mouse:
6.1
nTPM
Allen mouse:
0.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 36.0
2219
Male, age 76, both hemispheres
48.5
1870
Female, age 42, unknown
46.3
2828
Female, age 72, unknown
45.8
2019
Male, age 18, unknown
38.2
1830
Male, age 51, unknown
37.3
1833
Male, age 53, unknown
36.1
1827
Male, age 72, unknown
34.9
2411
Female, age 72, unknown
32.7
2586
Male, age 75, left hemisphere
20.3
2666
Male, age 74, left hemisphere
20.1
Dorsal raphe nucleus nTPM: 39.2
2016
Female, age 72, unknown
52.9
2298
Female, age 72, unknown
41.4
2750
Male, age 76, both hemispheres
38.3
2047
Male, age 72, unknown
31.9
1828
Male, age 53, unknown
31.6
Inferior colliculus nTPM: 32.2
1848
Female, age 42, unknown
34.9
1890
Male, age 53, unknown
31.9
2849
Male, age 72, unknown
31.3
2097
Female, age 72, unknown
30.6
Median raphe nucleus nTPM: 38.7
2220
Male, age 76, midline
38.7
Periaquaductal grey, anterior nTPM: 41.9
2502
Female, age 75, unknown
59.3
1795
Male, age 51, unknown
34.9
1947
Male, age 18, unknown
31.6
Periaquaductal grey, dorsal nTPM: 41.8
2850
Male, age 76, both hemispheres
54.7
1831
Male, age 72, unknown
41.3
1840
Male, age 53, unknown
40.4
2464
Female, age 72, unknown
30.9
Periaquaductal grey, lateral nTPM: 41.5
2140
Male, age 76, both hemispheres
49.2
2053
Male, age 18, unknown
38.5
2272
Male, age 74, both hemispheres
36.9
Pretectal area nTPM: 38.5
2316
Male, age 76, right hemisphere
50.9
2667
Female, age 75, unknown
47.9
2273
Male, age 74, both hemispheres
47.7
2224
Female, age 72, unknown
46.5
1815
Male, age 53, unknown
40.1
2407
Male, age 75, both hemispheres
39.4
1817
Female, age 42, unknown
34.2
1944
Female, age 72, unknown
32.4
2825
Male, age 18, unknown
31.7
2007
Male, age 72, unknown
28.2
1816
Male, age 51, unknown
24.3
Red nucleus nTPM: 40.2
2503
Female, age 72, unknown
47.8
1954
Female, age 42, unknown
47.2
2227
Male, age 72, unknown
45.0
1865
Male, age 51, unknown
44.4
2769
Male, age 72, unknown
43.3
2588
Male, age 74, left hemisphere
42.8
2785
Male, age 18, unknown
40.4
1821
Female, age 72, unknown
40.3
1904
Male, age 53, unknown
39.4
2823
Male, age 76, right hemisphere
36.3
2584
Male, age 75, left hemisphere
31.8
2725
Female, age 75, unknown
24.0
Substantia nigra nTPM: 43.5
2699
Male, age 18, unknown
84.0
2590
Female, age 75, unknown
50.9
1851
Male, age 51, unknown
48.0
2665
Male, age 74, both hemispheres
45.4
2409
Female, age 72, unknown
42.3
1941
Male, age 53, unknown
35.2
2241
Male, age 72, unknown
34.6
1916
Female, age 42, unknown
32.4
2583
Male, age 75, right hemisphere
31.8
1889
Female, age 72, unknown
30.7
Superior colliculus nTPM: 38.3
1913
Female, age 42, unknown
62.6
1995
Male, age 72, unknown
57.6
1839
Male, age 51, unknown
39.8
1796
Male, age 53, unknown
39.4
2587
Male, age 74, left hemisphere
36.8
2664
Male, age 75, both hemispheres
33.8
2087
Female, age 72, unknown
33.4
1895
Male, age 76, right hemisphere
27.6
2668
Female, age 75, unknown
26.1
2261
Male, age 18, unknown
25.9
Ventral tegmental area nTPM: 44.8
2021
Male, age 53, unknown
54.7
1942
Male, age 51, unknown
52.0
2223
Female, age 72, unknown
43.0
2218
Male, age 76, both hemispheres
42.0
1915
Female, age 42, unknown
41.1
2410
Female, age 72, unknown
35.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 16.6
Samples: 139
Max nTPM: 48.7
Min nTPM: 3.9
Std nTPM: 7.7
Median nTPM: 16.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
48.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
46.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
38.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
34.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
32.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
31.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
30.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
29.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
29.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
28.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
28.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
28.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
25.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
25.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
25.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
25.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
24.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
24.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
24.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
23.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
23.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
23.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
22.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
22.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
22.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
22.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
21.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
21.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
21.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
20.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
20.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
20.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
20.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
20.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
20.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
20.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
19.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
19.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
19.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
19.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
19.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
19.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
19.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
19.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
19.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
19.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
19.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
19.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
18.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
18.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
18.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
18.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
18.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
18.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
18.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
18.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
17.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
17.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
17.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
17.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
17.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
17.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
16.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
16.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
16.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
16.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
16.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
16.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
16.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
16.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
16.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
15.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
15.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
15.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
14.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
14.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
14.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
14.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
14.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
14.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
14.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
13.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
13.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
13.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
13.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
13.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
13.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
13.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
13.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
13.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
12.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
12.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
12.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
12.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
12.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
12.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
12.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
11.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
11.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
11.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
11.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
11.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
11.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
11.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
11.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
11.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
10.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
10.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
10.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
10.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
10.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
10.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
10.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
10.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
10.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
10.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
10.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
9.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
9.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
9.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
8.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
8.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
8.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
8.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
8.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
8.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
8.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
7.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
7.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
6.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
6.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
5.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
5.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
5.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
5.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
4.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
4.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
3.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
3.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 6.1
Samples: 4
Max nTPM: 7.0
Min nTPM: 5.1
Sample A
Male
5.1
Sample B
Male
5.9
Sample C
Female
7.0
Sample D
Female
6.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.