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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
579.0
nTPM
HPA Brain:
520.1
nTPM
GTEx:
579.0
nTPM
FANTOM5:
2047.9
Scaled Tags Per Million
Pig:
319.3
nTPM
Mouse:
9.5
nTPM
Allen mouse:
0.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
520.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 282.8
2666
Male, age 74, left hemisphere
409.3
1830
Male, age 51, unknown
386.7
2828
Female, age 72, unknown
354.0
1870
Female, age 42, unknown
309.2
1833
Male, age 53, unknown
297.4
2019
Male, age 18, unknown
272.1
2411
Female, age 72, unknown
247.8
1827
Male, age 72, unknown
218.5
2219
Male, age 76, both hemispheres
199.8
2586
Male, age 75, left hemisphere
133.4
Dorsal raphe nucleus nTPM: 418.8
2016
Female, age 72, unknown
555.9
2298
Female, age 72, unknown
541.2
1828
Male, age 53, unknown
401.1
2750
Male, age 76, both hemispheres
309.7
2047
Male, age 72, unknown
286.0
Inferior colliculus nTPM: 317.2
2097
Female, age 72, unknown
362.7
2849
Male, age 72, unknown
307.0
1890
Male, age 53, unknown
301.4
1848
Female, age 42, unknown
297.7
Median raphe nucleus nTPM: 369.0
2220
Male, age 76, midline
369.0
Periaquaductal grey, anterior nTPM: 284.4
1795
Male, age 51, unknown
358.1
2502
Female, age 75, unknown
265.3
1947
Male, age 18, unknown
229.8
Periaquaductal grey, dorsal nTPM: 452.6
1831
Male, age 72, unknown
651.4
2850
Male, age 76, both hemispheres
527.0
1840
Male, age 53, unknown
331.7
2464
Female, age 72, unknown
300.5
Periaquaductal grey, lateral nTPM: 520.1
2272
Male, age 74, both hemispheres
614.9
2140
Male, age 76, both hemispheres
479.9
2053
Male, age 18, unknown
465.5
Pretectal area nTPM: 330.7
2224
Female, age 72, unknown
477.4
2407
Male, age 75, both hemispheres
448.4
2273
Male, age 74, both hemispheres
445.7
2316
Male, age 76, right hemisphere
431.1
2825
Male, age 18, unknown
305.7
1817
Female, age 42, unknown
290.9
2667
Female, age 75, unknown
289.8
1815
Male, age 53, unknown
284.3
1944
Female, age 72, unknown
275.0
2007
Male, age 72, unknown
259.3
1816
Male, age 51, unknown
130.5
Red nucleus nTPM: 328.9
1865
Male, age 51, unknown
472.3
2503
Female, age 72, unknown
450.2
2725
Female, age 75, unknown
375.2
2227
Male, age 72, unknown
345.1
2823
Male, age 76, right hemisphere
340.5
2769
Male, age 72, unknown
339.6
1904
Male, age 53, unknown
336.1
2785
Male, age 18, unknown
333.9
1954
Female, age 42, unknown
299.5
1821
Female, age 72, unknown
298.6
2584
Male, age 75, left hemisphere
196.9
2588
Male, age 74, left hemisphere
158.8
Substantia nigra nTPM: 489.1
2699
Male, age 18, unknown
1018.5
2665
Male, age 74, both hemispheres
663.1
2590
Female, age 75, unknown
630.3
1916
Female, age 42, unknown
449.3
1851
Male, age 51, unknown
423.9
1941
Male, age 53, unknown
413.6
2409
Female, age 72, unknown
380.8
2583
Male, age 75, right hemisphere
370.2
2241
Male, age 72, unknown
317.2
1889
Female, age 72, unknown
223.7
Superior colliculus nTPM: 363.0
1913
Female, age 42, unknown
676.2
1995
Male, age 72, unknown
571.2
2587
Male, age 74, left hemisphere
520.7
2664
Male, age 75, both hemispheres
344.5
1839
Male, age 51, unknown
327.7
2087
Female, age 72, unknown
293.7
1796
Male, age 53, unknown
287.6
2668
Female, age 75, unknown
226.2
1895
Male, age 76, right hemisphere
193.4
2261
Male, age 18, unknown
188.9
Ventral tegmental area nTPM: 483.7
2021
Male, age 53, unknown
754.9
1915
Female, age 42, unknown
488.0
2218
Male, age 76, both hemispheres
460.4
1942
Male, age 51, unknown
439.1
2410
Female, age 72, unknown
394.6
2223
Female, age 72, unknown
365.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
579.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 579.0
Samples: 139
Max nTPM: 2332.4
Min nTPM: 80.2
Std nTPM: 421.3
Median nTPM: 482.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
2332.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
2062.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
2009.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
1730.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1539.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1485.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1482.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1379.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1299.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1277.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1273.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1255.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1222.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1152.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1146.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1139.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1130.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1100.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1025.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
1000.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
996.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
991.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
978.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
941.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
922.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
896.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
889.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
837.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
817.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
797.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
772.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
756.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
754.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
748.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
745.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
738.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
721.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
721.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
701.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
692.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
681.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
672.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
669.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
661.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
636.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
636.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
633.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
617.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
603.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
600.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
575.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
575.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
563.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
559.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
549.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
547.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
546.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
543.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
528.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
521.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
513.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
512.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
504.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
503.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
502.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
491.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
490.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
486.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
483.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
482.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
479.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
462.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
461.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
458.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
443.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
433.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
426.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
425.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
399.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
393.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
392.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
385.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
383.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
381.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
381.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
369.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
357.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
347.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
346.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
343.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
341.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
339.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
339.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
337.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
335.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
332.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
320.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
318.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
315.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
313.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
303.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
292.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
281.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
279.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
274.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
267.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
267.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
262.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
260.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
258.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
256.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
246.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
240.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
236.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
214.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
214.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
212.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
210.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
208.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
206.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
202.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
195.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
193.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
183.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
179.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
173.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
158.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
154.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
142.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
139.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
138.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
133.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
133.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
128.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
118.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
106.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
104.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
100.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
80.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 9.5
Samples: 4
Max nTPM: 15.6
Min nTPM: 4.8
Sample A
Male
15.6
Sample B
Male
10.5
Sample C
Female
4.8
Sample D
Female
6.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.