We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
338.8
nTPM
HPA Brain:
325.9
nTPM
GTEx:
338.8
nTPM
FANTOM5:
1131.5
Scaled Tags Per Million
Pig:
107.5
nTPM
Mouse:
7.9
nTPM
Allen mouse:
0.5
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA010592
Antibody CAB002506
Antibody CAB079994
Glial cells
Medium
Low
Medium
Neuronal cells
Not detected
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
325.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 325.9
2621
Female, age 67, right hemisphere
546.2
1855
Male, age 76, left hemisphere
395.2
1898
Male, age 80, left hemisphere
363.8
1911
Female, age 85, right hemisphere
235.8
2148
Female, age 91, left hemisphere
215.2
2529
Female, age 94, left hemisphere
199.4
Dentate gyrus nTPM: 249.0
2010
Male, age 76, both hemispheres
379.3
2531
Female, age 67, both hemispheres
265.1
2530
Female, age 94, left hemisphere
245.0
2246
Female, age 85, both hemispheres
226.4
2528
Male, age 74, both hemispheres
201.2
1927
Female, age 91, both hemispheres
177.0
Entorhinal gyrus nTPM: 224.6
2117
Female, age 91, right hemisphere
367.1
1787
Male, age 76, left hemisphere
296.4
2764
Male, age 80, right hemisphere
208.3
1938
Female, age 85, left hemisphere
179.6
2613
Female, age 94, left hemisphere
177.0
2686
Male, age 75, right hemisphere
118.9
Hippocampus, CA1 nTPM: 221.3
2045
Male, age 76, both hemispheres
302.8
2082
Female, age 91, right hemisphere
262.3
1873
Female, age 85, both hemispheres
214.6
2527
Male, age 74, both hemispheres
187.2
2749
Male, age 80, left hemisphere
139.9
Hippocampus, CA2 nTPM: 260.8
1940
Female, age 85, left hemisphere
422.7
2113
Female, age 91, right hemisphere
261.1
2437
Female, age 94, left hemisphere
258.6
1892
Male, age 76, both hemispheres
233.7
1963
Male, age 80, left hemisphere
209.4
2249
Male, age 74, both hemispheres
179.5
Hippocampus, CA3 nTPM: 194.5
2861
Female, age 67, both hemispheres
293.6
1867
Male, age 76, both hemispheres
276.9
1891
Female, age 85, both hemispheres
205.9
2436
Male, age 74, both hemispheres
168.5
2137
Male, age 80, left hemisphere
144.6
2620
Female, age 94, left hemisphere
77.5
Parahippocampal cortex nTPM: 222.8
2250
Female, age 67, right hemisphere
506.2
2018
Male, age 76, both hemispheres
385.7
2245
Female, age 91, both hemispheres
205.0
2693
Female, age 94, both hemispheres
198.2
1850
Male, age 80, both hemispheres
189.6
1990
Female, age 91, right hemisphere
175.8
2692
Male, age 74, both hemispheres
159.0
2532
Female, age 72, left hemisphere
158.6
1933
Female, age 85, both hemispheres
131.9
2622
Female, age 67, right hemisphere
118.3
Perirhinal gyrus nTPM: 222.0
2521
Female, age 94, right hemisphere
340.6
1794
Male, age 80, right hemisphere
227.4
1841
Female, age 85, right hemisphere
185.1
2848
Male, age 76, right hemisphere
182.0
1847
Female, age 91, left hemisphere
174.9
Subiculum nTPM: 267.6
2042
Male, age 76, both hemispheres
425.3
2729
Female, age 91, right hemisphere
325.3
2619
Male, age 74, both hemispheres
255.8
1901
Male, age 80, both hemispheres
222.8
2438
Female, age 94, left hemisphere
212.7
1977
Female, age 85, both hemispheres
163.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
338.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 338.8
Samples: 197
Max nTPM: 2285.0
Min nTPM: 32.1
Std nTPM: 271.2
Median nTPM: 271.5
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
2285.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
1188.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
1153.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
1064.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
994.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
982.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
973.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
922.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
917.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
906.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
829.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
808.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
754.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
713.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
710.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
695.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
689.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
686.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
683.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
678.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
675.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
673.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
661.6
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
660.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
654.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
633.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
599.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
594.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
587.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
577.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
569.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
549.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
544.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
539.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
529.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
529.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
523.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
520.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
519.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
499.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
497.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
495.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
473.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
473.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
471.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
456.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
449.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
439.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
436.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
434.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
430.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
421.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
417.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
416.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
410.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
405.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
396.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
395.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
382.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
380.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
379.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
370.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
368.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
362.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
358.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
351.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
347.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
340.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
338.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
330.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
329.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
328.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
327.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
324.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
315.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
313.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
313.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
306.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
304.1
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
303.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
300.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
297.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
296.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
295.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
292.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
292.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
290.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
287.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
287.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
284.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
283.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
282.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
282.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
282.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
278.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
275.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
273.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
272.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
271.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
270.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
269.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
266.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
266.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
264.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
258.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
258.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
257.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
256.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
255.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
254.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
252.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
251.9
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
251.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
236.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
235.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
231.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
228.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
223.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
222.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
218.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
212.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
200.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
199.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
198.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
196.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
195.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
194.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
193.2
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
190.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
190.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
189.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
188.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
179.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
178.7
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
178.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
172.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
170.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
170.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
169.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
165.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
164.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
164.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
163.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
163.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
162.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
162.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
161.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
159.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
156.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
156.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
156.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
152.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
151.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
149.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
149.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
147.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
144.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
143.6
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
143.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
141.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
136.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
136.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
132.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
132.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
131.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
128.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
126.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
126.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
125.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
120.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
119.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
112.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
109.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
106.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
104.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
104.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
104.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
103.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
101.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
100.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
98.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
93.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
93.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
93.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
92.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
92.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
79.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
77.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
75.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
71.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
62.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
60.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
58.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
52.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
49.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
45.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
32.1
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
7.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 7.9
Samples: 4
Max nTPM: 8.7
Min nTPM: 7.1
Sample A
Male
8.4
Sample B
Male
7.3
Sample C
Female
7.1
Sample D
Female
8.7
Hippocampal formation nTPM: 4.5
Samples: 4
Max nTPM: 5.6
Min nTPM: 3.5
Sample A
Male
4.5
Sample B
Male
4.2
Sample C
Female
3.5
Sample D
Female
5.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.