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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
58.4
nTPM
HPA Brain:
105.8
nTPM
GTEx:
58.4
nTPM
FANTOM5:
315.7
Scaled Tags Per Million
Pig:
83.5
nTPM
Mouse:
83.7
nTPM
Allen mouse:
1.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
105.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 89.6
1870
Female, age 42, unknown
113.6
2411
Female, age 72, unknown
113.5
1833
Male, age 53, unknown
108.9
1830
Male, age 51, unknown
106.7
2828
Female, age 72, unknown
88.7
2019
Male, age 18, unknown
87.3
1827
Male, age 72, unknown
73.6
2666
Male, age 74, left hemisphere
70.2
2219
Male, age 76, both hemispheres
68.8
2586
Male, age 75, left hemisphere
65.3
Dorsal raphe nucleus nTPM: 90.7
2750
Male, age 76, both hemispheres
113.2
2047
Male, age 72, unknown
93.2
1828
Male, age 53, unknown
90.7
2298
Female, age 72, unknown
80.3
2016
Female, age 72, unknown
76.1
Inferior colliculus nTPM: 73.7
1848
Female, age 42, unknown
82.6
1890
Male, age 53, unknown
74.0
2849
Male, age 72, unknown
73.3
2097
Female, age 72, unknown
64.9
Median raphe nucleus nTPM: 105.8
2220
Male, age 76, midline
105.8
Periaquaductal grey, anterior nTPM: 84.7
2502
Female, age 75, unknown
93.9
1947
Male, age 18, unknown
89.5
1795
Male, age 51, unknown
70.7
Periaquaductal grey, dorsal nTPM: 80.2
2850
Male, age 76, both hemispheres
103.4
2464
Female, age 72, unknown
82.3
1831
Male, age 72, unknown
70.1
1840
Male, age 53, unknown
65.1
Periaquaductal grey, lateral nTPM: 84.7
2140
Male, age 76, both hemispheres
95.0
2053
Male, age 18, unknown
87.9
2272
Male, age 74, both hemispheres
71.1
Pretectal area nTPM: 78.2
2667
Female, age 75, unknown
118.5
1815
Male, age 53, unknown
84.8
2825
Male, age 18, unknown
78.3
2273
Male, age 74, both hemispheres
76.8
2316
Male, age 76, right hemisphere
76.5
2224
Female, age 72, unknown
76.3
1817
Female, age 42, unknown
74.7
2407
Male, age 75, both hemispheres
74.6
1944
Female, age 72, unknown
72.2
1816
Male, age 51, unknown
64.3
2007
Male, age 72, unknown
63.7
Red nucleus nTPM: 102.3
1821
Female, age 72, unknown
134.5
1865
Male, age 51, unknown
128.8
1904
Male, age 53, unknown
123.0
1954
Female, age 42, unknown
115.7
2769
Male, age 72, unknown
108.0
2227
Male, age 72, unknown
104.4
2503
Female, age 72, unknown
93.8
2785
Male, age 18, unknown
89.0
2823
Male, age 76, right hemisphere
88.7
2725
Female, age 75, unknown
82.3
2588
Male, age 74, left hemisphere
81.0
2584
Male, age 75, left hemisphere
78.2
Substantia nigra nTPM: 94.2
1916
Female, age 42, unknown
151.9
2241
Male, age 72, unknown
119.5
2699
Male, age 18, unknown
107.8
1851
Male, age 51, unknown
99.8
2409
Female, age 72, unknown
91.4
1889
Female, age 72, unknown
89.8
1941
Male, age 53, unknown
82.1
2583
Male, age 75, right hemisphere
76.1
2590
Female, age 75, unknown
62.1
2665
Male, age 74, both hemispheres
61.8
Superior colliculus nTPM: 81.2
1913
Female, age 42, unknown
101.8
2587
Male, age 74, left hemisphere
87.7
1995
Male, age 72, unknown
86.5
2668
Female, age 75, unknown
84.1
1895
Male, age 76, right hemisphere
83.8
1839
Male, age 51, unknown
83.4
1796
Male, age 53, unknown
75.9
2087
Female, age 72, unknown
74.5
2261
Male, age 18, unknown
68.4
2664
Male, age 75, both hemispheres
66.3
Ventral tegmental area nTPM: 98.4
2223
Female, age 72, unknown
135.9
2410
Female, age 72, unknown
113.9
1915
Female, age 42, unknown
98.0
2218
Male, age 76, both hemispheres
83.9
2021
Male, age 53, unknown
81.1
1942
Male, age 51, unknown
77.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
58.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 58.4
Samples: 139
Max nTPM: 130.5
Min nTPM: 24.4
Std nTPM: 19.7
Median nTPM: 53.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
130.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
120.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
113.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
108.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
107.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
103.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
98.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
98.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
93.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
93.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
93.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
92.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
92.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
92.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
84.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
81.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
80.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
79.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
79.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
79.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
78.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
78.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
76.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
75.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
73.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
73.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
73.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
72.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
71.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
69.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
68.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
67.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
67.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
67.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
66.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
65.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
64.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
64.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
64.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
64.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
64.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
63.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
63.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
63.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
63.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
62.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
61.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
61.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
61.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
61.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
60.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
60.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
60.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
60.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
60.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
59.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
59.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
58.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
58.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
58.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
58.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
58.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
57.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
57.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
57.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
56.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
55.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
55.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
54.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
53.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
53.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
53.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
53.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
52.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
52.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
52.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
52.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
51.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
51.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
51.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
50.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
50.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
50.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
50.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
49.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
49.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
49.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
49.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
49.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
48.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
48.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
48.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
47.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
47.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
47.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
47.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
46.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
46.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
45.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
45.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
44.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
44.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
44.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
44.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
44.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
43.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
43.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
43.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
43.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
43.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
43.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
43.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
43.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
42.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
42.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
42.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
40.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
40.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
40.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
39.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
39.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
39.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
39.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
38.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
37.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
37.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
36.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
36.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
36.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
35.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
35.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
35.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
33.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
32.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
31.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
29.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
28.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
28.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
24.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
83.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 83.7
Samples: 4
Max nTPM: 87.1
Min nTPM: 81.6
Sample A
Male
81.6
Sample B
Male
82.5
Sample C
Female
83.7
Sample D
Female
87.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.