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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
38.4
nTPM
HPA Brain:
81.7
nTPM
GTEx:
38.4
nTPM
FANTOM5:
0.5
Scaled Tags Per Million
Pig:
2.4
nTPM
Mouse:
0.1
nTPM
Allen mouse:
0.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
81.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 65.3
1830
Male, age 51, unknown
85.2
2411
Female, age 72, unknown
82.7
1833
Male, age 53, unknown
78.8
2019
Male, age 18, unknown
71.9
1870
Female, age 42, unknown
64.9
2586
Male, age 75, left hemisphere
62.9
2666
Male, age 74, left hemisphere
61.7
2828
Female, age 72, unknown
53.4
1827
Male, age 72, unknown
46.8
2219
Male, age 76, both hemispheres
45.1
Dorsal raphe nucleus nTPM: 45.3
2750
Male, age 76, both hemispheres
93.1
2016
Female, age 72, unknown
43.4
1828
Male, age 53, unknown
42.5
2047
Male, age 72, unknown
29.7
2298
Female, age 72, unknown
17.8
Inferior colliculus nTPM: 39.8
1890
Male, age 53, unknown
47.8
2849
Male, age 72, unknown
44.1
1848
Female, age 42, unknown
41.2
2097
Female, age 72, unknown
26.3
Median raphe nucleus nTPM: 47.2
2220
Male, age 76, midline
47.2
Periaquaductal grey, anterior nTPM: 33.0
1947
Male, age 18, unknown
38.9
1795
Male, age 51, unknown
35.3
2502
Female, age 75, unknown
24.7
Periaquaductal grey, dorsal nTPM: 31.0
2464
Female, age 72, unknown
56.8
1831
Male, age 72, unknown
31.0
1840
Male, age 53, unknown
18.7
2850
Male, age 76, both hemispheres
17.6
Periaquaductal grey, lateral nTPM: 33.3
2272
Male, age 74, both hemispheres
44.2
2053
Male, age 18, unknown
37.5
2140
Male, age 76, both hemispheres
18.2
Pretectal area nTPM: 42.1
2316
Male, age 76, right hemisphere
75.8
2407
Male, age 75, both hemispheres
67.0
1815
Male, age 53, unknown
55.0
2825
Male, age 18, unknown
42.5
2667
Female, age 75, unknown
41.0
2007
Male, age 72, unknown
39.0
1817
Female, age 42, unknown
38.5
2224
Female, age 72, unknown
32.5
2273
Male, age 74, both hemispheres
29.1
1944
Female, age 72, unknown
22.2
1816
Male, age 51, unknown
21.0
Red nucleus nTPM: 81.7
2823
Male, age 76, right hemisphere
109.4
1865
Male, age 51, unknown
104.4
2503
Female, age 72, unknown
94.4
2588
Male, age 74, left hemisphere
91.1
1904
Male, age 53, unknown
84.9
2785
Male, age 18, unknown
81.2
1821
Female, age 72, unknown
80.1
2769
Male, age 72, unknown
79.1
2227
Male, age 72, unknown
78.4
2584
Male, age 75, left hemisphere
73.9
2725
Female, age 75, unknown
52.9
1954
Female, age 42, unknown
50.7
Substantia nigra nTPM: 46.0
2583
Male, age 75, right hemisphere
63.0
2590
Female, age 75, unknown
57.1
2409
Female, age 72, unknown
56.2
2699
Male, age 18, unknown
48.3
1889
Female, age 72, unknown
47.9
1851
Male, age 51, unknown
47.4
2241
Male, age 72, unknown
42.9
1941
Male, age 53, unknown
40.3
2665
Male, age 74, both hemispheres
37.7
1916
Female, age 42, unknown
19.6
Superior colliculus nTPM: 60.1
1913
Female, age 42, unknown
117.4
1995
Male, age 72, unknown
82.5
2668
Female, age 75, unknown
79.9
1895
Male, age 76, right hemisphere
69.4
1839
Male, age 51, unknown
56.7
2587
Male, age 74, left hemisphere
53.6
2664
Male, age 75, both hemispheres
40.8
1796
Male, age 53, unknown
36.5
2087
Female, age 72, unknown
35.8
2261
Male, age 18, unknown
28.1
Ventral tegmental area nTPM: 50.7
2223
Female, age 72, unknown
71.3
2410
Female, age 72, unknown
64.9
2021
Male, age 53, unknown
48.1
2218
Male, age 76, both hemispheres
46.6
1942
Male, age 51, unknown
42.8
1915
Female, age 42, unknown
30.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
38.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 38.4
Samples: 139
Max nTPM: 186.2
Min nTPM: 3.1
Std nTPM: 27.8
Median nTPM: 31.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
186.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
185.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
118.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
113.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
108.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
103.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
87.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
84.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
81.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
75.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
74.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
69.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
62.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
62.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
62.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
62.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
61.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
59.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
59.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
58.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
57.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
56.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
55.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
55.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
55.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
52.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
51.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
51.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
50.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
50.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
49.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
49.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
49.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
48.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
48.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
46.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
46.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
45.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
45.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
45.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
44.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
43.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
42.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
42.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
42.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
40.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
40.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
40.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
39.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
39.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
39.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
38.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
38.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
38.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
36.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
36.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
35.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
35.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
35.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
34.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
33.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
33.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
33.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
32.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
32.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
32.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
31.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
31.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
31.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
31.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
31.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
31.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
31.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
30.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
29.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
29.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
29.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
29.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
29.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
29.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
29.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
29.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
29.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
28.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
28.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
27.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
26.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
26.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
26.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
26.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
26.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
25.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
25.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
25.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
25.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
25.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
24.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
24.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
24.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
24.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
23.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
22.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
22.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
22.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
21.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
21.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
20.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
20.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
20.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
20.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
19.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
19.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
19.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
18.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
18.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
18.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
18.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
18.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
17.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
17.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
16.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
15.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
15.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
15.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
14.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
14.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
12.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
12.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
12.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
12.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
11.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
9.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
9.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
9.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
8.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
6.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
4.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
3.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
3.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.2
Samples: 4
Max nTPM: 0.5
Min nTPM: 0.0
Sample A
Male
0.0
Sample B
Male
0.5
Sample C
Female
0.0
Sample D
Female
0.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.