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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
37.7
nTPM
HPA Brain:
58.6
nTPM
GTEx:
37.7
nTPM
FANTOM5:
0.5
Scaled Tags Per Million
Pig:
1.0
nTPM
Mouse:
0.1
nTPM
Allen mouse:
0.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA024353
Antibody HPA066523
Antibody CAB002418
Glial cells
Not detected
Not detected
Not detected
Neuronal cells
Not detected
Medium
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
58.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 33.9
1911
Female, age 85, right hemisphere
49.9
2529
Female, age 94, left hemisphere
46.9
2621
Female, age 67, right hemisphere
31.4
1855
Male, age 76, left hemisphere
26.7
2148
Female, age 91, left hemisphere
24.7
1898
Male, age 80, left hemisphere
24.0
Dentate gyrus nTPM: 41.1
2530
Female, age 94, left hemisphere
73.0
2528
Male, age 74, both hemispheres
42.0
2246
Female, age 85, both hemispheres
41.0
2010
Male, age 76, both hemispheres
39.2
2531
Female, age 67, both hemispheres
29.0
1927
Female, age 91, both hemispheres
22.1
Entorhinal gyrus nTPM: 36.1
2764
Male, age 80, right hemisphere
52.8
2117
Female, age 91, right hemisphere
48.4
2613
Female, age 94, left hemisphere
34.1
2686
Male, age 75, right hemisphere
28.5
1787
Male, age 76, left hemisphere
27.3
1938
Female, age 85, left hemisphere
25.5
Hippocampus, CA1 nTPM: 26.7
2082
Female, age 91, right hemisphere
43.3
1873
Female, age 85, both hemispheres
34.2
2527
Male, age 74, both hemispheres
30.3
2749
Male, age 80, left hemisphere
17.9
2045
Male, age 76, both hemispheres
8.0
Hippocampus, CA2 nTPM: 35.1
2437
Female, age 94, left hemisphere
42.9
2113
Female, age 91, right hemisphere
41.8
1940
Female, age 85, left hemisphere
37.8
1963
Male, age 80, left hemisphere
37.2
2249
Male, age 74, both hemispheres
35.1
1892
Male, age 76, both hemispheres
16.1
Hippocampus, CA3 nTPM: 24.2
1891
Female, age 85, both hemispheres
65.6
2436
Male, age 74, both hemispheres
22.3
1867
Male, age 76, both hemispheres
22.0
2137
Male, age 80, left hemisphere
19.4
2620
Female, age 94, left hemisphere
8.8
2861
Female, age 67, both hemispheres
7.5
Parahippocampal cortex nTPM: 31.1
2692
Male, age 74, both hemispheres
56.8
1990
Female, age 91, right hemisphere
49.4
2532
Female, age 72, left hemisphere
47.7
1850
Male, age 80, both hemispheres
33.6
2018
Male, age 76, both hemispheres
28.4
2245
Female, age 91, both hemispheres
26.3
1933
Female, age 85, both hemispheres
26.2
2693
Female, age 94, both hemispheres
18.5
2250
Female, age 67, right hemisphere
14.9
2622
Female, age 67, right hemisphere
8.9
Perirhinal gyrus nTPM: 19.2
2848
Male, age 76, right hemisphere
22.9
1794
Male, age 80, right hemisphere
21.5
1847
Female, age 91, left hemisphere
19.9
2521
Female, age 94, right hemisphere
18.3
1841
Female, age 85, right hemisphere
13.5
Subiculum nTPM: 58.6
2042
Male, age 76, both hemispheres
90.7
1901
Male, age 80, both hemispheres
76.2
2438
Female, age 94, left hemisphere
54.7
2619
Male, age 74, both hemispheres
48.4
1977
Female, age 85, both hemispheres
45.5
2729
Female, age 91, right hemisphere
36.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
37.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 37.7
Samples: 197
Max nTPM: 208.3
Min nTPM: 2.4
Std nTPM: 30.3
Median nTPM: 30.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
208.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
189.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
124.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
121.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
119.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
110.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
110.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
109.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
107.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
103.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
103.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
94.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
89.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
88.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
87.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
84.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
82.6
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
78.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
77.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
74.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
74.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
72.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
71.3
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
70.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
68.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
66.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
65.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
60.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
59.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
59.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
59.5
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
58.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
58.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
56.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
56.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
56.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
56.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
55.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
53.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
51.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
51.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
50.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
48.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
48.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
46.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
46.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
46.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
45.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
45.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
45.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
45.5
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
45.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
45.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
43.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
43.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
43.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
43.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
43.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
42.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
42.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
42.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
42.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
42.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
41.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
40.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
40.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
40.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
39.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
38.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
38.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
38.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
37.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
37.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
37.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
37.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
36.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
36.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
36.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
36.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
35.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
35.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
34.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
34.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
34.0
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
34.0
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
33.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
33.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
33.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
33.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
33.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
32.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
32.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
32.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
31.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
31.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
31.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
30.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
30.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
30.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
30.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
29.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
28.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
28.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
28.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
28.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
28.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
27.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
27.0
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
26.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
25.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
25.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
25.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
25.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
24.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
24.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
24.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
24.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
24.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
24.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
24.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
23.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
23.8
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
23.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
23.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
23.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
23.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
23.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
23.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
22.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
22.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
21.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
21.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
21.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
20.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
20.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
20.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
20.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
19.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
19.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
19.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
19.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
19.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
19.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
18.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
18.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
18.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
18.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
17.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
17.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
17.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
17.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
17.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
17.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
17.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
16.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
16.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
16.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
16.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
16.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
16.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
16.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
15.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
15.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
15.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
15.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
15.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
14.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
14.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
14.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
14.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
13.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
13.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
12.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
12.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
12.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
12.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
12.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
11.5
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
11.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
11.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
11.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
10.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
8.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
7.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
6.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
6.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
6.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
6.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
6.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
5.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
4.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
4.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
3.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
3.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
3.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
2.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
2.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 0.1
Samples: 4
Max nTPM: 0.2
Min nTPM: 0.1
Sample A
Male
0.1
Sample B
Male
0.2
Sample C
Female
0.1
Sample D
Female
0.1
Hippocampal formation nTPM: 0.1
Samples: 4
Max nTPM: 0.3
Min nTPM: 0.0
Sample A
Male
0.0
Sample B
Male
0.0
Sample C
Female
0.3
Sample D
Female
0.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.