We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
11.1
nTPM
HPA Brain:
27.9
nTPM
GTEx:
11.1
nTPM
FANTOM5:
62.5
Scaled Tags Per Million
Pig:
28.3
nTPM
Mouse:
23.0
nTPM
Allen mouse:
0.5
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA018955
Antibody HPA021123
Glial cells
Not detected
Not detected
Neuronal cells
Medium
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 27.8
2148
Female, age 91, left hemisphere
29.9
2529
Female, age 94, left hemisphere
29.1
2621
Female, age 67, right hemisphere
28.3
1855
Male, age 76, left hemisphere
27.8
1898
Male, age 80, left hemisphere
27.0
1911
Female, age 85, right hemisphere
24.5
Dentate gyrus nTPM: 27.0
2531
Female, age 67, both hemispheres
31.5
2010
Male, age 76, both hemispheres
27.6
2530
Female, age 94, left hemisphere
26.7
2528
Male, age 74, both hemispheres
26.2
1927
Female, age 91, both hemispheres
25.3
2246
Female, age 85, both hemispheres
25.1
Entorhinal gyrus nTPM: 26.1
2117
Female, age 91, right hemisphere
29.1
2764
Male, age 80, right hemisphere
26.7
2686
Male, age 75, right hemisphere
26.4
1938
Female, age 85, left hemisphere
25.1
1787
Male, age 76, left hemisphere
25.0
2613
Female, age 94, left hemisphere
24.2
Hippocampus, CA1 nTPM: 26.4
2045
Male, age 76, both hemispheres
28.5
2082
Female, age 91, right hemisphere
26.4
1873
Female, age 85, both hemispheres
26.2
2749
Male, age 80, left hemisphere
26.1
2527
Male, age 74, both hemispheres
24.7
Hippocampus, CA2 nTPM: 25.6
1963
Male, age 80, left hemisphere
28.7
2113
Female, age 91, right hemisphere
26.9
2437
Female, age 94, left hemisphere
26.8
1892
Male, age 76, both hemispheres
25.4
1940
Female, age 85, left hemisphere
23.8
2249
Male, age 74, both hemispheres
21.9
Hippocampus, CA3 nTPM: 27.9
2861
Female, age 67, both hemispheres
33.3
2620
Female, age 94, left hemisphere
33.1
1867
Male, age 76, both hemispheres
26.0
2137
Male, age 80, left hemisphere
25.9
1891
Female, age 85, both hemispheres
25.4
2436
Male, age 74, both hemispheres
23.7
Parahippocampal cortex nTPM: 24.5
2532
Female, age 72, left hemisphere
26.7
2622
Female, age 67, right hemisphere
26.6
2692
Male, age 74, both hemispheres
26.1
2250
Female, age 67, right hemisphere
25.4
1990
Female, age 91, right hemisphere
24.4
2245
Female, age 91, both hemispheres
24.3
2693
Female, age 94, both hemispheres
23.9
1933
Female, age 85, both hemispheres
23.7
2018
Male, age 76, both hemispheres
23.4
1850
Male, age 80, both hemispheres
20.8
Perirhinal gyrus nTPM: 23.7
2848
Male, age 76, right hemisphere
25.9
1847
Female, age 91, left hemisphere
24.8
1794
Male, age 80, right hemisphere
23.2
2521
Female, age 94, right hemisphere
23.0
1841
Female, age 85, right hemisphere
21.5
Subiculum nTPM: 24.2
2729
Female, age 91, right hemisphere
26.4
2619
Male, age 74, both hemispheres
24.6
2042
Male, age 76, both hemispheres
24.5
1977
Female, age 85, both hemispheres
24.3
1901
Male, age 80, both hemispheres
23.7
2438
Female, age 94, left hemisphere
21.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 11.1
Samples: 197
Max nTPM: 22.0
Min nTPM: 5.6
Std nTPM: 1.7
Median nTPM: 10.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
22.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
16.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
15.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
14.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
14.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
14.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
13.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
13.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
13.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
13.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
13.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
13.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
13.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
13.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
13.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
13.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
13.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
13.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
13.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
13.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
12.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
12.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
12.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
12.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
12.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
12.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
12.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
12.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
12.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
12.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
12.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
12.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
12.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
12.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
12.3
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
12.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
12.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
12.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
12.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
12.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
12.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
12.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
12.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
12.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
12.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
12.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
12.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
12.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
12.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
11.9
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
11.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
11.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
11.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
11.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
11.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
11.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
11.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
11.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
11.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
11.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
11.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
11.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
11.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
11.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
11.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
11.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
11.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
11.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
11.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
11.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
11.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
11.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
11.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
11.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
11.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
11.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
11.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
11.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
11.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
11.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
11.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
11.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
11.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
11.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
11.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
11.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
11.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
11.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
11.1
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
11.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
11.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
11.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
11.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
11.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
11.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
11.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
11.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
11.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
10.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
10.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
10.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
10.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
10.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
10.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
10.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
10.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
10.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
10.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
10.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
10.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
10.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
10.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
10.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
10.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
10.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
10.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
10.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
10.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
10.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
10.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
10.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
10.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
10.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
10.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
10.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
10.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
10.5
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
10.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
10.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
10.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
10.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
10.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
10.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
10.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
10.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
10.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
10.3
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
10.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
10.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
10.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
10.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
10.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
10.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
10.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
10.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
10.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
10.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
10.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
10.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
10.0
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
10.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
10.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
10.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
9.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
9.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
9.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
9.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
9.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
9.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
9.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
9.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
9.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
9.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
9.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
9.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
9.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
9.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
9.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
9.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
9.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
9.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
9.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
9.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
9.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
9.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
9.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
9.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
9.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
9.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
8.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
8.9
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
8.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
8.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
8.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
8.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
8.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
8.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
8.6
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
8.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
8.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
8.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
8.4
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
8.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
7.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
7.4
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
6.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
5.6
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 20.6
Samples: 4
Max nTPM: 22.7
Min nTPM: 18.4
Sample A
Male
20.2
Sample B
Male
18.4
Sample C
Female
21.1
Sample D
Female
22.7
Hippocampal formation nTPM: 23.0
Samples: 4
Max nTPM: 25.6
Min nTPM: 19.8
Sample A
Male
19.8
Sample B
Male
22.8
Sample C
Female
25.6
Sample D
Female
23.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.