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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
24.5
nTPM
HPA Brain:
9.8
nTPM
GTEx:
24.5
nTPM
FANTOM5:
82.2
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA008467
Antibody HPA041113
Antibody CAB002169
Antibody CAB076057
Glial cells
High
Medium
Medium
Not detected
Neuronal cells
High
Medium
High
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 6.7
1898
Male, age 80, left hemisphere
9.8
1911
Female, age 85, right hemisphere
7.7
2621
Female, age 67, right hemisphere
7.1
2148
Female, age 91, left hemisphere
6.3
2529
Female, age 94, left hemisphere
5.6
1855
Male, age 76, left hemisphere
3.7
Dentate gyrus nTPM: 7.5
1927
Female, age 91, both hemispheres
11.0
2010
Male, age 76, both hemispheres
7.7
2530
Female, age 94, left hemisphere
7.6
2246
Female, age 85, both hemispheres
7.4
2531
Female, age 67, both hemispheres
6.8
2528
Male, age 74, both hemispheres
4.6
Entorhinal gyrus nTPM: 5.7
1787
Male, age 76, left hemisphere
7.0
1938
Female, age 85, left hemisphere
6.4
2764
Male, age 80, right hemisphere
6.1
2613
Female, age 94, left hemisphere
5.0
2686
Male, age 75, right hemisphere
5.0
2117
Female, age 91, right hemisphere
4.9
Hippocampus, CA1 nTPM: 9.8
2749
Male, age 80, left hemisphere
23.1
1873
Female, age 85, both hemispheres
8.5
2045
Male, age 76, both hemispheres
6.6
2527
Male, age 74, both hemispheres
5.8
2082
Female, age 91, right hemisphere
4.9
Hippocampus, CA2 nTPM: 8.1
2249
Male, age 74, both hemispheres
11.3
1892
Male, age 76, both hemispheres
10.3
1963
Male, age 80, left hemisphere
8.1
1940
Female, age 85, left hemisphere
6.5
2113
Female, age 91, right hemisphere
6.5
2437
Female, age 94, left hemisphere
5.9
Hippocampus, CA3 nTPM: 9.1
2137
Male, age 80, left hemisphere
18.8
2436
Male, age 74, both hemispheres
9.5
2620
Female, age 94, left hemisphere
8.7
1867
Male, age 76, both hemispheres
7.5
1891
Female, age 85, both hemispheres
5.0
2861
Female, age 67, both hemispheres
4.9
Parahippocampal cortex nTPM: 6.3
2532
Female, age 72, left hemisphere
9.3
2250
Female, age 67, right hemisphere
8.2
1933
Female, age 85, both hemispheres
6.8
1850
Male, age 80, both hemispheres
6.4
2245
Female, age 91, both hemispheres
5.8
2018
Male, age 76, both hemispheres
5.7
1990
Female, age 91, right hemisphere
5.5
2622
Female, age 67, right hemisphere
5.2
2693
Female, age 94, both hemispheres
5.1
2692
Male, age 74, both hemispheres
4.7
Perirhinal gyrus nTPM: 6.9
1847
Female, age 91, left hemisphere
10.7
1841
Female, age 85, right hemisphere
6.9
2848
Male, age 76, right hemisphere
6.5
1794
Male, age 80, right hemisphere
6.0
2521
Female, age 94, right hemisphere
4.6
Subiculum nTPM: 6.2
1901
Male, age 80, both hemispheres
10.7
1977
Female, age 85, both hemispheres
8.2
2729
Female, age 91, right hemisphere
5.8
2042
Male, age 76, both hemispheres
4.4
2619
Male, age 74, both hemispheres
4.3
2438
Female, age 94, left hemisphere
3.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 24.5
Samples: 197
Max nTPM: 99.3
Min nTPM: 2.8
Std nTPM: 16.4
Median nTPM: 19.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
99.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
79.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
70.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
68.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
67.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
65.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
61.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
60.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
59.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
58.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
56.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
53.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
53.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
52.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
52.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
47.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
47.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
47.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
47.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
47.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
46.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
46.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
46.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
46.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
45.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
45.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
44.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
43.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
43.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
43.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
42.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
41.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
41.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
41.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
40.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
40.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
39.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
39.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
39.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
38.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
38.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
37.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
37.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
36.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
35.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
33.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
33.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
32.7
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
32.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
31.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
31.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
31.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
31.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
31.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
30.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
29.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
29.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
29.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
28.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
27.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
27.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
27.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
26.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
26.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
26.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
26.5
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
26.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
26.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
26.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
26.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
26.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
25.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
25.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
24.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
24.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
24.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
24.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
23.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
23.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
23.1
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
22.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
22.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
22.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
22.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
22.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
22.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
22.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
21.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
21.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
21.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
21.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
20.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
20.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
20.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
20.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
19.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
19.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
19.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
19.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
19.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
19.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
19.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
19.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
18.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
18.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
18.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
18.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
18.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
17.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
17.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
17.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
17.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
17.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
17.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
17.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
16.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
16.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
16.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
16.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
16.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
16.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
16.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
16.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
16.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
16.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
15.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
15.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
15.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
15.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
15.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
15.6
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
15.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
15.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
15.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
15.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
14.8
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
14.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
14.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
14.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
14.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
14.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
14.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
13.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
13.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
13.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
13.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
13.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
12.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
12.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
12.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
12.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
12.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
11.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
11.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
11.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
11.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
10.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
10.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
10.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
10.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
10.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
10.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
10.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
10.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
10.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
10.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
10.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
9.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
9.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
9.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
9.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
9.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
9.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
9.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
9.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
9.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
8.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
7.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
7.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
7.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
7.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
6.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
6.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
6.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
6.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
6.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
6.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
5.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
5.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
5.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
4.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
4.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
4.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
4.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
3.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
3.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
2.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.