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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
400.3
nTPM
FANTOM5:
547.6
Scaled Tags Per Million
Pig:
109.4
nTPM
Allen mouse:
6.9
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
400.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 230.3
2301
Female, age 85, both hemispheres
260.4
1984
Male, age 76, both hemispheres
254.3
2188
Female, age 91, both hemispheres
203.4
2090
Male, age 80, both hemispheres
203.2
Dorsal cochlear nucleus nTPM: 293.4
2370
Male, age 61, both hemispheres
325.6
2058
Male, age 76, both hemispheres
324.3
2802
Male, age 74, right hemisphere
315.6
2187
Female, age 91, both hemispheres
265.8
2378
Male, age 80, both hemispheres
235.7
Dorsal tegmental nucleus nTPM: 279.1
2083
Male, age 80, both hemispheres
317.1
2358
Male, age 61, both hemispheres
278.5
1936
Male, age 76, left hemisphere
264.9
2326
Male, age 74, both hemispheres
255.8
Dorsolateral tegmental area nTPM: 272.4
2141
Male, age 76, both hemispheres
395.8
2654
Male, age 80, both hemispheres
305.3
2751
Female, age 85, both hemispheres
282.0
2360
Male, age 74, both hemispheres
209.4
2337
Male, age 61, both hemispheres
169.7
Kolliker-Fuse nucleus nTPM: 268.4
2163
Male, age 80, both hemispheres
351.6
2793
Female, age 91, left hemisphere
245.5
2315
Male, age 76, right hemisphere
208.3
Lateral lemniscal nuclei nTPM: 339.0
2453
Male, age 74, right hemisphere
391.9
2169
Male, age 76, both hemispheres
383.7
2036
Male, age 80, both hemispheres
357.5
2746
Female, age 85, left hemisphere
291.2
2320
Female, age 91, left hemisphere
270.8
Lateral parabrachial nucleus nTPM: 259.9
2790
Male, age 61, both hemispheres
321.0
2139
Female, age 85, right hemisphere
320.8
2013
Male, age 80, both hemispheres
238.3
2792
Male, age 76, both hemispheres
159.2
Lateral vestibular nucleus nTPM: 312.7
2184
Male, age 76, both hemispheres
346.3
2311
Male, age 80, both hemispheres
279.1
Locus coeruleus nTPM: 394.9
2317
Female, age 72, unknown
420.4
2162
Male, age 80, both hemispheres
411.7
2014
Male, age 55, unknown
405.0
2720
Male, age 74, both hemispheres
393.9
2123
Female, age 91, both hemispheres
386.9
2788
Male, age 74, unknown
377.7
1980
Male, age 76, both hemispheres
368.8
Medial parabrachial nucleus nTPM: 295.1
2156
Male, age 61, both hemispheres
364.1
2786
Male, age 76, both hemispheres
309.2
2170
Female, age 91, both hemispheres
282.6
2854
Male, age 80, both hemispheres
275.1
2463
Female, age 85, right hemisphere
244.2
Medial periolivary nuclei nTPM: 323.4
2171
Female, age 85, both hemispheres
434.8
2063
Male, age 76, both hemispheres
417.5
2791
Male, age 74, right hemisphere
284.2
2458
Female, age 91, both hemispheres
274.5
2081
Male, age 80, both hemispheres
206.2
Motor facial nucleus nTPM: 342.2
2062
Male, age 76, both hemispheres
440.0
2795
Female, age 91, both hemispheres
409.2
2327
Male, age 80, both hemispheres
335.1
2365
Male, age 74, right hemisphere
316.0
2697
Female, age 85, both hemispheres
281.0
2126
Male, age 61, both hemispheres
271.9
Motor trigeminal nucleus nTPM: 300.0
2560
Male, age 74, both hemispheres
330.4
2335
Male, age 61, both hemispheres
328.1
2309
Male, age 76, both hemispheres
324.4
2079
Male, age 80, both hemispheres
280.8
2321
Female, age 91, both hemispheres
236.4
Nuclei of the trapezoid body nTPM: 377.5
2735
Female, age 85, both hemispheres
427.3
2159
Male, age 61, both hemispheres
417.2
1983
Male, age 76, both hemispheres
392.0
2368
Female, age 91, both hemispheres
356.8
2166
Male, age 80, both hemispheres
294.3
Nucleus raphe magnus nTPM: 377.8
2172
Female, age 85, both hemispheres
483.8
2160
Male, age 61, both hemispheres
474.2
2455
Male, age 74, both hemispheres
399.2
2328
Male, age 80, both hemispheres
319.9
2051
Male, age 76, both hemispheres
296.6
2459
Female, age 91, both hemispheres
293.2
Paramedian reticular nucleus nTPM: 327.5
2313
Male, age 61, both hemispheres
396.7
2050
Female, age 85, both hemispheres
356.4
2057
Male, age 80, both hemispheres
342.8
2052
Male, age 76, both hemispheres
214.0
Pedunculopontine tegmental nucleus nTPM: 305.3
1921
Female, age 85, both hemispheres
352.5
2334
Male, age 80, both hemispheres
334.3
2338
Male, age 61, both hemispheres
229.1
Pontine nuclei nTPM: 322.1
2787
Female, age 85, both hemispheres
433.8
2727
Male, age 61, right hemisphere
392.4
1863
Male, age 55, unknown
378.2
1968
Male, age 76, left hemisphere
356.7
2109
Female, age 72, unknown
342.3
2454
Male, age 74, left hemisphere
246.5
2115
Male, age 80, left hemisphere
226.3
2319
Female, age 91, both hemispheres
200.3
Pontine raphe nucleus nTPM: 400.3
2853
Male, age 76, midline
402.6
2122
Female, age 85, midline
398.0
Posteroventral cochlear nucleus nTPM: 250.4
2752
Female, age 85, both hemispheres
385.4
2070
Male, age 76, both hemispheres
309.0
2371
Male, age 61, both hemispheres
292.5
2341
Male, age 80, both hemispheres
137.0
2135
Female, age 91, both hemispheres
128.0
Principal sensory trigeminal nucleus nTPM: 321.4
2158
Male, age 61, both hemispheres
439.1
2324
Male, age 76, both hemispheres
317.5
2008
Male, age 80, left hemisphere
296.0
2367
Female, age 91, left hemisphere
233.1
Reticular pontine nucleus, caudal nTPM: 294.7
2332
Male, age 80, right hemisphere
340.8
2092
Male, age 76, both hemispheres
314.9
2457
Female, age 91, both hemispheres
261.7
2559
Male, age 74, both hemispheres
261.5
Reticular pontine nucleus, oral nTPM: 271.4
2167
Male, age 76, both hemispheres
348.1
2012
Female, age 85, both hemispheres
298.7
1939
Male, age 80, both hemispheres
284.9
2366
Female, age 91, both hemispheres
226.1
2361
Male, age 74, both hemispheres
199.3
Reticulotegmental nucleus nTPM: 323.9
2452
Male, age 74, both hemispheres
362.3
2325
Male, age 76, both hemispheres
358.4
2333
Male, age 80, both hemispheres
295.3
2322
Female, age 91, both hemispheres
279.5
Spinal trigeminal nucleus, oral nTPM: 336.6
1978
Male, age 76, both hemispheres
394.3
2164
Male, age 80, both hemispheres
308.0
2737
Female, age 85, both hemispheres
307.4
Subcoeruleus area nTPM: 327.2
2323
Female, age 91, left hemisphere
398.2
2451
Male, age 74, both hemispheres
378.5
1958
Male, age 80, both hemispheres
320.9
2089
Male, age 76, left hemisphere
305.8
2369
Female, age 85, left hemisphere
232.7
Superior olive nTPM: 298.9
1875
Female, age 85, both hemispheres
341.3
2561
Female, age 91, both hemispheres
302.3
2329
Male, age 80, right hemisphere
292.1
2020
Male, age 76, both hemispheres
284.6
2364
Male, age 74, right hemisphere
274.0
Ventral periolivary nuclei nTPM: 339.2
2130
Female, age 85, both hemispheres
440.8
2165
Male, age 80, both hemispheres
344.8
2794
Female, age 91, left hemisphere
292.2
2023
Male, age 76, both hemispheres
278.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 311.6
2449
Male, age 74, both hemispheres
349.5
2359
Male, age 61, both hemispheres
324.4
1959
Male, age 76, both hemispheres
309.5
2840
Female, age 85, both hemispheres
299.8
2161
Male, age 80, both hemispheres
294.9
2456
Female, age 91, both hemispheres
291.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
109.4
Pig sample
Sample description
nTPM
Pons nTPM: 109.4
Samples: 4
Max nTPM: 140.1
Min nTPM: 93.7
Sample A
Female
140.1
Sample B
Female
93.7
Sample C
Male
95.9
Sample D
Male
107.9
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.