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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
116.7
nTPM
HPA Brain:
438.3
nTPM
GTEx:
116.7
nTPM
FANTOM5:
156.9
Scaled Tags Per Million
Pig:
119.0
nTPM
Mouse:
209.3
nTPM
Allen mouse:
9.7
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
438.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 361.9
2586
Male, age 75, left hemisphere
566.2
2666
Male, age 74, left hemisphere
465.8
1827
Male, age 72, unknown
388.6
2219
Male, age 76, both hemispheres
375.2
2828
Female, age 72, unknown
346.2
2411
Female, age 72, unknown
314.8
1870
Female, age 42, unknown
313.3
1833
Male, age 53, unknown
309.1
1830
Male, age 51, unknown
272.2
2019
Male, age 18, unknown
267.9
Dorsal raphe nucleus nTPM: 334.6
2047
Male, age 72, unknown
396.7
2298
Female, age 72, unknown
388.7
1828
Male, age 53, unknown
313.9
2750
Male, age 76, both hemispheres
299.6
2016
Female, age 72, unknown
273.9
Inferior colliculus nTPM: 371.5
2097
Female, age 72, unknown
395.6
1848
Female, age 42, unknown
395.3
2849
Male, age 72, unknown
376.6
1890
Male, age 53, unknown
318.6
Median raphe nucleus nTPM: 413.3
2220
Male, age 76, midline
413.3
Periaquaductal grey, anterior nTPM: 438.3
2502
Female, age 75, unknown
495.5
1795
Male, age 51, unknown
417.9
1947
Male, age 18, unknown
401.4
Periaquaductal grey, dorsal nTPM: 329.5
1840
Male, age 53, unknown
411.0
2464
Female, age 72, unknown
330.1
1831
Male, age 72, unknown
319.8
2850
Male, age 76, both hemispheres
257.2
Periaquaductal grey, lateral nTPM: 249.3
2053
Male, age 18, unknown
299.9
2140
Male, age 76, both hemispheres
253.6
2272
Male, age 74, both hemispheres
194.6
Pretectal area nTPM: 341.3
1816
Male, age 51, unknown
462.3
2007
Male, age 72, unknown
413.3
1944
Female, age 72, unknown
410.9
1817
Female, age 42, unknown
405.1
1815
Male, age 53, unknown
363.5
2224
Female, age 72, unknown
361.0
2825
Male, age 18, unknown
331.7
2407
Male, age 75, both hemispheres
302.1
2667
Female, age 75, unknown
278.1
2316
Male, age 76, right hemisphere
244.4
2273
Male, age 74, both hemispheres
182.4
Red nucleus nTPM: 253.9
2584
Male, age 75, left hemisphere
370.3
2785
Male, age 18, unknown
288.0
2588
Male, age 74, left hemisphere
277.5
2503
Female, age 72, unknown
274.4
2227
Male, age 72, unknown
255.3
2769
Male, age 72, unknown
254.8
1821
Female, age 72, unknown
250.0
2725
Female, age 75, unknown
245.0
1954
Female, age 42, unknown
222.4
1865
Male, age 51, unknown
209.9
1904
Male, age 53, unknown
209.2
2823
Male, age 76, right hemisphere
189.8
Substantia nigra nTPM: 372.5
2665
Male, age 74, both hemispheres
499.3
1916
Female, age 42, unknown
446.2
1851
Male, age 51, unknown
418.6
1941
Male, age 53, unknown
395.2
1889
Female, age 72, unknown
383.8
2699
Male, age 18, unknown
345.9
2583
Male, age 75, right hemisphere
339.9
2241
Male, age 72, unknown
327.1
2590
Female, age 75, unknown
294.0
2409
Female, age 72, unknown
274.9
Superior colliculus nTPM: 357.2
2664
Male, age 75, both hemispheres
499.0
2668
Female, age 75, unknown
462.4
1796
Male, age 53, unknown
435.0
2261
Male, age 18, unknown
373.1
2087
Female, age 72, unknown
370.8
1839
Male, age 51, unknown
344.3
1895
Male, age 76, right hemisphere
328.6
2587
Male, age 74, left hemisphere
286.8
1913
Female, age 42, unknown
245.9
1995
Male, age 72, unknown
226.1
Ventral tegmental area nTPM: 392.7
2223
Female, age 72, unknown
427.1
2218
Male, age 76, both hemispheres
413.8
1915
Female, age 42, unknown
403.6
1942
Male, age 51, unknown
398.2
2410
Female, age 72, unknown
365.7
2021
Male, age 53, unknown
348.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
116.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 116.7
Samples: 139
Max nTPM: 358.0
Min nTPM: 48.7
Std nTPM: 48.0
Median nTPM: 104.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
358.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
265.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
253.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
223.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
220.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
215.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
212.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
200.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
199.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
195.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
195.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
192.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
191.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
189.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
188.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
185.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
184.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
181.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
180.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
176.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
175.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
172.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
167.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
165.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
153.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
152.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
146.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
146.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
142.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
142.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
138.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
136.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
135.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
130.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
129.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
128.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
127.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
126.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
126.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
126.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
125.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
123.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
123.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
122.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
121.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
120.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
119.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
117.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
116.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
115.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
115.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
115.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
114.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
114.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
114.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
113.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
113.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
112.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
111.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
111.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
111.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
111.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
110.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
110.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
109.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
108.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
107.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
106.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
104.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
104.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
103.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
103.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
101.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
101.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
101.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
101.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
100.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
99.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
99.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
98.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
98.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
97.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
96.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
95.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
94.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
91.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
91.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
90.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
90.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
89.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
89.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
89.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
88.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
88.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
88.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
88.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
88.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
88.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
87.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
86.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
86.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
86.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
86.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
85.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
85.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
85.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
83.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
83.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
82.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
82.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
81.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
81.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
81.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
81.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
80.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
79.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
79.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
77.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
77.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
77.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
76.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
73.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
73.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
71.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
71.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
70.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
70.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
70.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
68.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
66.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
65.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
62.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
61.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
60.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
59.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
58.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
57.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
55.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
48.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
209.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 209.3
Samples: 4
Max nTPM: 219.1
Min nTPM: 192.7
Sample A
Male
192.7
Sample B
Male
219.1
Sample C
Female
216.2
Sample D
Female
209.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.