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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
301.9
nTPM
HPA Brain:
1088.0
nTPM
GTEx:
301.9
nTPM
FANTOM5:
1098.4
Scaled Tags Per Million
Pig:
179.7
nTPM
Mouse:
339.5
nTPM
Allen mouse:
12.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA078003
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1088.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 974.1
2621
Female, age 67, right hemisphere
1215.1
1898
Male, age 80, left hemisphere
1031.3
2148
Female, age 91, left hemisphere
1002.1
1855
Male, age 76, left hemisphere
873.4
2529
Female, age 94, left hemisphere
864.2
1911
Female, age 85, right hemisphere
858.5
Dentate gyrus nTPM: 914.1
2531
Female, age 67, both hemispheres
1187.1
1927
Female, age 91, both hemispheres
1172.1
2010
Male, age 76, both hemispheres
833.7
2530
Female, age 94, left hemisphere
795.6
2246
Female, age 85, both hemispheres
762.8
2528
Male, age 74, both hemispheres
733.4
Entorhinal gyrus nTPM: 818.2
2613
Female, age 94, left hemisphere
1015.6
1938
Female, age 85, left hemisphere
863.4
2764
Male, age 80, right hemisphere
820.6
2686
Male, age 75, right hemisphere
812.8
1787
Male, age 76, left hemisphere
784.5
2117
Female, age 91, right hemisphere
612.3
Hippocampus, CA1 nTPM: 1088.0
2749
Male, age 80, left hemisphere
1682.0
2527
Male, age 74, both hemispheres
1124.8
2045
Male, age 76, both hemispheres
939.8
1873
Female, age 85, both hemispheres
899.9
2082
Female, age 91, right hemisphere
793.4
Hippocampus, CA2 nTPM: 918.9
1963
Male, age 80, left hemisphere
1612.5
1892
Male, age 76, both hemispheres
965.6
2113
Female, age 91, right hemisphere
907.1
2437
Female, age 94, left hemisphere
767.0
2249
Male, age 74, both hemispheres
635.5
1940
Female, age 85, left hemisphere
625.5
Hippocampus, CA3 nTPM: 1087.0
2137
Male, age 80, left hemisphere
1730.7
2861
Female, age 67, both hemispheres
1359.0
2620
Female, age 94, left hemisphere
1063.7
1867
Male, age 76, both hemispheres
936.4
1891
Female, age 85, both hemispheres
717.8
2436
Male, age 74, both hemispheres
714.3
Parahippocampal cortex nTPM: 849.9
2245
Female, age 91, both hemispheres
1212.7
2018
Male, age 76, both hemispheres
917.7
2693
Female, age 94, both hemispheres
884.1
1850
Male, age 80, both hemispheres
852.6
2622
Female, age 67, right hemisphere
846.7
2250
Female, age 67, right hemisphere
830.9
1933
Female, age 85, both hemispheres
770.0
1990
Female, age 91, right hemisphere
740.9
2532
Female, age 72, left hemisphere
736.9
2692
Male, age 74, both hemispheres
706.5
Perirhinal gyrus nTPM: 976.0
1847
Female, age 91, left hemisphere
1137.1
2521
Female, age 94, right hemisphere
1075.3
1794
Male, age 80, right hemisphere
978.1
2848
Male, age 76, right hemisphere
848.0
1841
Female, age 85, right hemisphere
841.7
Subiculum nTPM: 704.1
1901
Male, age 80, both hemispheres
824.4
1977
Female, age 85, both hemispheres
779.3
2729
Female, age 91, right hemisphere
721.5
2619
Male, age 74, both hemispheres
673.7
2042
Male, age 76, both hemispheres
637.3
2438
Female, age 94, left hemisphere
588.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
301.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 301.9
Samples: 197
Max nTPM: 953.2
Min nTPM: 36.0
Std nTPM: 182.3
Median nTPM: 267.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
953.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
858.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
851.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
837.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
751.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
748.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
723.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
688.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
668.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
662.0
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
655.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
648.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
632.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
607.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
607.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
604.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
586.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
580.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
576.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
543.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
528.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
527.8
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
527.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
525.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
523.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
522.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
513.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
505.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
502.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
500.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
499.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
494.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
465.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
465.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
462.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
457.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
456.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
455.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
449.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
446.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
440.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
435.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
429.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
427.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
425.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
421.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
419.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
418.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
413.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
401.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
399.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
397.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
385.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
378.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
377.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
376.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
373.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
371.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
369.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
365.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
364.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
363.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
362.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
362.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
351.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
346.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
345.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
341.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
338.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
334.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
328.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
325.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
325.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
322.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
319.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
317.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
317.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
316.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
312.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
312.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
311.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
309.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
306.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
303.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
301.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
296.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
295.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
292.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
287.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
284.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
282.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
281.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
279.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
278.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
277.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
274.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
273.9
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
269.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
267.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
265.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
258.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
256.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
256.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
255.5
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
250.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
246.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
244.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
244.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
243.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
239.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
239.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
238.8
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
238.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
231.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
231.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
227.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
225.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
224.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
224.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
218.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
215.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
213.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
211.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
206.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
206.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
205.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
204.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
203.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
199.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
198.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
196.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
194.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
192.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
190.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
189.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
186.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
186.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
184.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
183.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
183.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
181.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
178.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
177.8
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
177.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
173.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
173.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
173.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
162.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
162.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
158.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
150.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
149.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
149.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
144.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
144.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
136.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
134.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
134.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
134.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
133.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
130.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
129.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
128.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
127.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
124.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
124.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
122.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
115.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
114.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
112.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
112.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
108.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
104.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
103.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
102.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
101.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
100.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
100.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
96.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
95.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
91.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
90.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
88.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
86.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
85.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
81.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
81.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
80.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
79.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
79.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
77.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
69.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
69.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
63.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
56.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
51.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
36.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
339.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 339.5
Samples: 4
Max nTPM: 421.6
Min nTPM: 302.4
Sample A
Male
312.4
Sample B
Male
302.4
Sample C
Female
321.4
Sample D
Female
421.6
Hippocampal formation nTPM: 250.6
Samples: 4
Max nTPM: 284.3
Min nTPM: 225.9
Sample A
Male
284.3
Sample B
Male
249.5
Sample C
Female
242.8
Sample D
Female
225.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.