MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.2 nTPM
HPA Brain:50.7 nTPM
GTEx:21.2 nTPM
FANTOM5:19.1 Scaled Tags Per Million
Pig:104.3 nTPM
Mouse:119.2 nTPM
Allen mouse:15.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 50.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.2
2666 Male, age 74, left hemisphere 53.9
2828 Female, age 72, unknown 46.9
2019 Male, age 18, unknown 46.6
1827 Male, age 72, unknown 45.2
2586 Male, age 75, left hemisphere 39.7
2411 Female, age 72, unknown 32.3
1870 Female, age 42, unknown 32.0
1833 Male, age 53, unknown 31.8
1830 Male, age 51, unknown 28.1
2219 Male, age 76, both hemispheres 25.5
Dorsal raphe nucleus
nTPM: 31.6
2298 Female, age 72, unknown 38.5
1828 Male, age 53, unknown 32.1
2047 Male, age 72, unknown 30.8
2750 Male, age 76, both hemispheres 30.3
2016 Female, age 72, unknown 26.3
Inferior colliculus
nTPM: 45.3
2097 Female, age 72, unknown 53.4
1848 Female, age 42, unknown 44.0
2849 Male, age 72, unknown 44.0
1890 Male, age 53, unknown 40.0
Median raphe nucleus
nTPM: 27.1
2220 Male, age 76, midline 27.1
Periaquaductal grey, anterior
nTPM: 46.6
1795 Male, age 51, unknown 51.6
2502 Female, age 75, unknown 48.0
1947 Male, age 18, unknown 40.1
Periaquaductal grey, dorsal
nTPM: 38.2
1840 Male, age 53, unknown 43.3
1831 Male, age 72, unknown 40.5
2464 Female, age 72, unknown 36.8
2850 Male, age 76, both hemispheres 32.3
Periaquaductal grey, lateral
nTPM: 32.8
2053 Male, age 18, unknown 36.5
2140 Male, age 76, both hemispheres 36.1
2272 Male, age 74, both hemispheres 25.8
Pretectal area
nTPM: 50.7
1816 Male, age 51, unknown 77.6
1944 Female, age 72, unknown 74.7
1817 Female, age 42, unknown 67.9
2007 Male, age 72, unknown 65.1
1815 Male, age 53, unknown 52.2
2667 Female, age 75, unknown 45.1
2407 Male, age 75, both hemispheres 42.8
2224 Female, age 72, unknown 36.2
2825 Male, age 18, unknown 35.9
2316 Male, age 76, right hemisphere 33.4
2273 Male, age 74, both hemispheres 26.7
Red nucleus
nTPM: 32.0
2785 Male, age 18, unknown 46.3
2725 Female, age 75, unknown 42.4
2584 Male, age 75, left hemisphere 42.2
2823 Male, age 76, right hemisphere 36.9
2769 Male, age 72, unknown 29.7
1821 Female, age 72, unknown 29.0
2227 Male, age 72, unknown 27.8
2588 Male, age 74, left hemisphere 27.4
1904 Male, age 53, unknown 27.0
1954 Female, age 42, unknown 26.0
2503 Female, age 72, unknown 25.4
1865 Male, age 51, unknown 24.0
Substantia nigra
nTPM: 33.0
1889 Female, age 72, unknown 50.7
2583 Male, age 75, right hemisphere 43.5
2665 Male, age 74, both hemispheres 42.2
1941 Male, age 53, unknown 37.3
1851 Male, age 51, unknown 30.9
1916 Female, age 42, unknown 29.4
2590 Female, age 75, unknown 28.5
2241 Male, age 72, unknown 25.7
2409 Female, age 72, unknown 22.9
2699 Male, age 18, unknown 19.4
Superior colliculus
nTPM: 45.6
2087 Female, age 72, unknown 67.3
2664 Male, age 75, both hemispheres 60.1
2261 Male, age 18, unknown 53.0
1796 Male, age 53, unknown 48.6
1895 Male, age 76, right hemisphere 42.6
1839 Male, age 51, unknown 39.4
1995 Male, age 72, unknown 38.2
2668 Female, age 75, unknown 37.4
1913 Female, age 42, unknown 35.7
2587 Male, age 74, left hemisphere 33.7
Ventral tegmental area
nTPM: 32.8
2218 Male, age 76, both hemispheres 39.1
1942 Male, age 51, unknown 35.9
1915 Female, age 42, unknown 32.4
2021 Male, age 53, unknown 30.5
2410 Female, age 72, unknown 30.1
2223 Female, age 72, unknown 28.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.2
Samples: 139

Max nTPM: 57.7
Min nTPM: 4.2
Std nTPM: 10.2
Median nTPM: 19.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 57.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 56.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 53.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 48.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 46.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 46.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 41.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 40.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 39.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 37.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 36.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.1
FF:10158-103A5 76 years, female 19.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 104.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.9
Samples: 4

Max nTPM: 75.9
Min nTPM: 65.8
Sample A Female 70.5
Sample B Female 75.9
Sample C Male 75.5
Sample D Male 65.8
Midbrain
nTPM: 91.0
Samples: 4

Max nTPM: 157.3
Min nTPM: 53.4
Sample A Female 53.4
Sample B Female 55.7
Sample C Male 157.3
Sample D Male 97.6
Periaqueductal gray
nTPM: 61.3
Samples: 3

Max nTPM: 68.6
Min nTPM: 55.2
Sample B Female 60.1
Sample C Male 68.6
Sample D Male 55.2
Superior colliculi
nTPM: 104.4
Samples: 4

Max nTPM: 136.7
Min nTPM: 75.5
Sample A Female 95.1
Sample B Female 75.5
Sample C Male 136.7
Sample D Male 110.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 119.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 119.2
Samples: 4

Max nTPM: 128.3
Min nTPM: 111.2
Sample A Male 111.2
Sample B Male 112.5
Sample C Female 128.3
Sample D Female 124.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.1
2135 Antisense, RP_040407_02_G05, Mouse strain C57BL/6J (56 days, male) 15.1
2136 Antisense, RP_040407_02_G05, Mouse strain C57BL/6J (56 days, male) 9.0

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