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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
415.1
nTPM
HPA Brain:
511.6
nTPM
GTEx:
415.1
nTPM
FANTOM5:
32.9
Scaled Tags Per Million
Pig:
56.9
nTPM
Mouse:
107.5
nTPM
Allen mouse:
5.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
511.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 279.2
1827
Male, age 72, unknown
397.8
2219
Male, age 76, both hemispheres
369.6
2411
Female, age 72, unknown
309.9
2019
Male, age 18, unknown
299.9
2666
Male, age 74, left hemisphere
290.8
2828
Female, age 72, unknown
270.5
1833
Male, age 53, unknown
232.8
1870
Female, age 42, unknown
230.3
1830
Male, age 51, unknown
206.9
2586
Male, age 75, left hemisphere
183.7
Dorsal raphe nucleus nTPM: 322.3
2298
Female, age 72, unknown
403.6
2750
Male, age 76, both hemispheres
392.1
2047
Male, age 72, unknown
335.6
1828
Male, age 53, unknown
321.0
2016
Female, age 72, unknown
159.3
Inferior colliculus nTPM: 229.0
2097
Female, age 72, unknown
239.2
1848
Female, age 42, unknown
231.2
2849
Male, age 72, unknown
230.9
1890
Male, age 53, unknown
214.9
Median raphe nucleus nTPM: 511.6
2220
Male, age 76, midline
511.6
Periaquaductal grey, anterior nTPM: 244.7
1795
Male, age 51, unknown
313.2
1947
Male, age 18, unknown
233.8
2502
Female, age 75, unknown
187.0
Periaquaductal grey, dorsal nTPM: 217.3
2850
Male, age 76, both hemispheres
246.4
1831
Male, age 72, unknown
221.5
2464
Female, age 72, unknown
201.6
1840
Male, age 53, unknown
199.7
Periaquaductal grey, lateral nTPM: 170.5
2140
Male, age 76, both hemispheres
183.2
2053
Male, age 18, unknown
165.0
2272
Male, age 74, both hemispheres
163.2
Pretectal area nTPM: 335.5
1817
Female, age 42, unknown
518.5
1944
Female, age 72, unknown
489.8
2007
Male, age 72, unknown
464.1
1816
Male, age 51, unknown
453.1
2667
Female, age 75, unknown
421.0
1815
Male, age 53, unknown
382.5
2224
Female, age 72, unknown
314.6
2825
Male, age 18, unknown
226.7
2316
Male, age 76, right hemisphere
174.2
2407
Male, age 75, both hemispheres
127.5
2273
Male, age 74, both hemispheres
118.8
Red nucleus nTPM: 215.1
2725
Female, age 75, unknown
333.1
2785
Male, age 18, unknown
291.2
1821
Female, age 72, unknown
250.9
2823
Male, age 76, right hemisphere
229.5
1954
Female, age 42, unknown
208.0
2584
Male, age 75, left hemisphere
202.0
2227
Male, age 72, unknown
191.2
2588
Male, age 74, left hemisphere
190.4
2769
Male, age 72, unknown
188.7
1865
Male, age 51, unknown
166.1
2503
Female, age 72, unknown
166.1
1904
Male, age 53, unknown
164.2
Substantia nigra nTPM: 338.2
2665
Male, age 74, both hemispheres
635.2
1916
Female, age 42, unknown
463.4
1889
Female, age 72, unknown
447.8
1941
Male, age 53, unknown
413.0
1851
Male, age 51, unknown
331.9
2699
Male, age 18, unknown
265.0
2409
Female, age 72, unknown
256.4
2241
Male, age 72, unknown
228.7
2590
Female, age 75, unknown
204.3
2583
Male, age 75, right hemisphere
135.8
Superior colliculus nTPM: 238.9
1895
Male, age 76, right hemisphere
351.6
2087
Female, age 72, unknown
346.6
1796
Male, age 53, unknown
294.5
2261
Male, age 18, unknown
242.4
2587
Male, age 74, left hemisphere
220.5
1839
Male, age 51, unknown
216.9
1913
Female, age 42, unknown
211.3
2668
Female, age 75, unknown
197.7
2664
Male, age 75, both hemispheres
161.0
1995
Male, age 72, unknown
146.6
Ventral tegmental area nTPM: 315.4
2218
Male, age 76, both hemispheres
530.2
1915
Female, age 42, unknown
377.4
2410
Female, age 72, unknown
331.3
1942
Male, age 51, unknown
242.7
2021
Male, age 53, unknown
221.2
2223
Female, age 72, unknown
189.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
415.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 415.1
Samples: 139
Max nTPM: 1710.6
Min nTPM: 28.9
Std nTPM: 322.2
Median nTPM: 332.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1710.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1205.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1179.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1138.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1060.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1058.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
977.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
965.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
940.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
931.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
929.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
911.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
888.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
871.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
861.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
861.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
826.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
818.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
807.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
804.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
802.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
778.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
768.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
762.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
737.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
723.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
716.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
696.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
696.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
694.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
693.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
683.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
668.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
659.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
658.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
642.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
641.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
639.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
635.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
633.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
622.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
622.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
582.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
580.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
575.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
566.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
506.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
492.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
466.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
460.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
459.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
458.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
454.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
442.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
436.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
434.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
427.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
420.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
410.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
397.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
387.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
374.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
369.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
369.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
366.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
358.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
353.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
339.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
335.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
332.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
327.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
321.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
319.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
306.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
288.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
281.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
277.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
271.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
269.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
269.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
262.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
256.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
245.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
242.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
228.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
210.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
203.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
202.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
196.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
195.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
189.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
186.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
185.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
182.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
180.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
175.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
172.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
168.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
162.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
158.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
154.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
152.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
151.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
150.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
147.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
144.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
142.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
128.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
128.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
122.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
121.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
117.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
112.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
111.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
108.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
105.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
103.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
96.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
90.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
89.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
88.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
88.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
86.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
79.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
78.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
77.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
72.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
68.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
68.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
67.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
61.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
56.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
53.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
50.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
46.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
45.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
44.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
30.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
28.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
107.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 107.5
Samples: 4
Max nTPM: 119.1
Min nTPM: 93.2
Sample A
Male
109.3
Sample B
Male
108.3
Sample C
Female
93.2
Sample D
Female
119.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.