We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
87.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
82.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
80.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
78.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
78.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
76.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
69.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
68.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
68.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
68.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
67.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
67.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
66.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
65.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
65.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
64.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
64.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
63.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
63.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
63.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
62.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
62.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
60.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
60.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
58.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
58.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
58.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
57.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
56.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
56.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
56.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
56.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
54.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
54.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
54.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
54.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
53.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
52.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
52.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
52.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
51.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
51.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
51.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
50.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
50.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
49.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
49.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
49.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
49.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
49.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
48.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
48.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
48.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
48.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
47.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
47.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
47.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
47.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
46.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
46.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
46.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
45.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
45.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
45.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
44.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
44.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
44.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
44.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
44.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
44.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
43.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
43.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
43.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
43.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
43.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
43.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
42.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
42.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
42.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
42.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
42.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
42.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
41.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
41.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
41.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
41.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
41.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
40.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
40.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
40.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
40.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
40.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
40.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
40.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
40.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
39.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
39.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
39.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
39.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
39.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
39.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
39.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
39.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
38.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
38.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
38.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
38.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
38.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
38.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
38.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
38.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
38.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
37.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
37.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
37.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
37.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
37.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
37.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
37.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
37.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
37.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
36.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
36.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
36.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
35.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
35.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
34.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
34.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
34.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
34.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
34.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
34.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
33.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
33.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
33.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
33.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
33.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
33.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
33.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
32.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
32.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
32.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
31.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
30.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
30.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
30.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
30.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
30.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
30.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
30.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
29.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
29.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
29.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
28.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
24.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.9
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
100.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
90.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
74.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
74.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
70.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
68.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
67.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
61.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
61.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
60.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
59.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
59.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
59.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
59.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
59.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
58.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
58.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
57.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
57.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
55.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
54.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
54.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
54.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
54.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
53.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
52.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
52.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
52.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
52.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
51.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
50.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
50.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
50.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
50.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
50.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
50.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
50.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
49.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
49.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
48.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
48.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
48.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
48.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
48.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
47.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
47.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
47.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
46.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
46.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
46.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
46.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
45.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
45.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
45.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
45.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
45.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
44.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
44.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
44.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
44.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
43.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
43.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
43.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
42.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
42.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
42.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
42.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
42.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
42.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
42.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
42.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
41.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
41.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
41.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
40.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
40.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
40.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
40.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
40.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
40.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
40.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
40.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
39.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
39.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
39.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
39.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
39.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
39.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
39.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
38.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
38.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
38.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
38.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
38.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
37.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
36.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
36.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
36.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
36.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
36.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
36.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
36.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
36.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
35.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
35.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
35.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
35.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
35.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
35.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
34.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
34.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
34.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
34.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
33.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
33.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
33.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
33.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
33.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
33.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
33.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
33.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
32.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
32.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
32.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
32.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
32.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
31.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
31.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
31.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
30.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
30.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
30.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
29.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
29.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
29.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
28.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
27.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
0.9
537
Tumor
0.7
745
Tumor
0.7
865
Tumor
0.7
663
Tumor
0.7
463
Tumor
0.6
487
Tumor
0.6
647
Tumor
0.6
523
Tumor
0.6
695
Tumor
0.6
285
Tumor
0.5
937
Tumor
0.5
533
Tumor
0.5
277
Tumor
0.5
921
Tumor
0.5
851
Tumor
0.4
465
Tumor
0.4
221
Tumor
0.4
135
Tumor
0.4
477
Tumor
0.4
411
Tumor
0.4
161
Tumor
0.4
147
Tumor
0.4
1025
Tumor
0.4
112
Tumor
0.4
313
Tumor
0.4
227
Tumor
0.4
391
Tumor
0.4
737
Tumor
0.4
1013
Tumor
0.4
435
Tumor
0.4
777
Tumor
0.4
363
Tumor
0.3
257
Tumor
0.3
951
Tumor
0.3
1021
Tumor
0.3
125
Tumor
0.3
425
Tumor
0.3
431
Tumor
0.3
515
Tumor
0.3
525
Tumor
0.3
484
Normal
0.3
983
Tumor
0.3
553
Tumor
0.3
513
Tumor
0.3
327
Tumor
0.3
131
Tumor
0.3
473
Tumor
0.3
545
Tumor
0.3
267
Tumor
0.3
471
Tumor
0.2
617
Tumor
0.2
481
Tumor
0.2
271
Tumor
0.2
882
Normal
0.2
573
Tumor
0.2
1027
Tumor
0.2
443
Tumor
0.2
873
Tumor
0.2
564
Normal
0.2
815
Tumor
0.2
488
Normal
0.2
141
Tumor
0.2
1045
Tumor
0.2
483
Tumor
0.2
641
Tumor
0.2
456
Normal
0.2
196
Normal
0.2
546
Normal
0.2
494
Normal
0.2
1043
Tumor
0.2
554
Normal
0.2
452
Normal
0.2
423
Tumor
0.2
445
Tumor
0.2
615
Tumor
0.2
944
Normal
0.2
912
Normal
0.2
952
Normal
0.2
222
Normal
0.2
923
Tumor
0.2
568
Normal
0.2
563
Tumor
0.2
723
Tumor
0.2
755
Tumor
0.2
713
Tumor
0.2
137
Tumor
0.1
744
Normal
0.1
955
Tumor
0.1
1014
Normal
0.1
915
Tumor
0.1
981
Tumor
0.1
355
Tumor
0.1
696
Normal
0.1
343
Tumor
0.1
436
Normal
0.1
396
Normal
0.1
1031
Tumor
0.1
741
Tumor
0.1
1041
Tumor
0.1
883
Tumor
0.1
228
Normal
0.1
1046
Normal
0.1
698
Normal
0.1
1016
Normal
0.1
446
Normal
0.1
746
Normal
0.1
517
Tumor
0.1
218
Normal
0.1
482
Normal
0.1
982
Normal
0.1
466
Normal
0.1
148
Normal
0.1
413
Tumor
0.1
214
Normal
0.1
1022
Normal
0.1
394
Normal
0.1
356
Normal
0.1
412
Normal
0.1
558
Normal
0.1
388
Normal
0.1
472
Normal
0.1
432
Normal
0.1
464
Normal
0.1
636
Normal
0.1
298
Normal
0.1
878
Normal
0.1
984
Normal
0.1
756
Normal
0.1
421
Tumor
0.1
474
Normal
0.1
518
Normal
0.1
567
Tumor
0.1
114
Normal
0.1
497
Tumor
0.1
922
Normal
0.1
714
Normal
0.1
722
Normal
0.1
492
Normal
0.1
924
Normal
0.1
977
Tumor
0.1
186
Normal
0.1
357
Tumor
0.1
527
Tumor
0.1
572
Normal
0.1
824
Normal
0.1
858
Normal
0.1
162
Normal
0.1
728
Normal
0.1
697
Tumor
0.1
956
Normal
0.1
913
Tumor
0.1
468
Normal
0.1
392
Normal
0.1
361
Tumor
0.1
223
Tumor
0.1
448
Normal
0.1
1042
Normal
0.1
642
Normal
0.0
127
Tumor
0.0
283
Tumor
0.0
113
Tumor
0.0
342
Normal
0.0
195
Tumor
0.0
778
Normal
0.0
813
Tumor
0.0
416
Normal
0.0
918
Normal
0.0
393
Tumor
0.0
172
Normal
0.0
351
Tumor
0.0
367
Tumor
0.0
1026
Normal
0.0
742
Normal
0.0
146
Normal
0.0
142
Normal
0.0
978
Normal
0.0
648
Normal
0.0
331
Tumor
0.0
738
Normal
0.0
965
Tumor
0.0
138
Normal
0.0
557
Tumor
0.0
866
Normal
0.0
818
Normal
0.0
925
Tumor
0.0
467
Tumor
0.0
415
Tumor
0.0
387
Tumor
0.0
528
Normal
0.0
375
Tumor
0.0
364
Normal
0.0
111
Normal
0.0
332
Normal
0.0
534
Normal
0.0
926
Normal
0.0
953
Tumor
0.0
635
Tumor
0.0
864
Normal
0.0
817
Tumor
0.0
538
Normal
0.0
618
Normal
0.0
862
Normal
0.0
574
Normal
0.0
1044
Normal
0.0
672
Normal
0.0
861
Tumor
0.0
884
Normal
0.0
128
Normal
0.0
964
Normal
0.0
857
Tumor
0.0
344
Normal
0.0
498
Normal
0.0
426
Normal
0.0
881
Tumor
0.0
664
Normal
0.0
491
Tumor
0.0
376
Normal
0.0
966
Normal
0.0
938
Normal
0.0
571
Tumor
0.0
261
Tumor
0.0
516
Normal
0.0
422
Normal
0.0
874
Normal
0.0
365
Tumor
0.0
232
Normal
0.0
1028
Normal
0.0
187
Tumor
0.0
716
Normal
0.0
976
Normal
0.0
493
Tumor
0.0
286
Normal
0.0
628
Normal
0.0
943
Tumor
0.0
462
Normal
0.0
823
Tumor
0.0
284
Normal
0.0
224
Normal
0.0
424
Normal
0.0
852
Normal
0.0
368
Normal
0.0
427
Tumor
0.0
386
Normal
-0.1
816
Normal
-0.1
444
Normal
-0.1
686
Normal
-0.1
278
Normal
-0.1
967
Tumor
-0.1
185
Tumor
-0.1
136
Normal
-0.1
428
Normal
-0.1
132
Normal
-0.1
383
Tumor
-0.1
297
Tumor
-0.1
786
Normal
-0.1
353
Tumor
-0.1
328
Normal
-0.1
217
Tumor
-0.1
354
Normal
-0.1
721
Tumor
-0.1
478
Normal
-0.1
535
Tumor
-0.1
258
Normal
-0.1
312
Normal
-0.1
352
Normal
-0.1
526
Normal
-0.1
341
Tumor
-0.1
451
Tumor
-0.1
1032
Normal
-0.1
461
Tumor
-0.1
188
Normal
-0.1
366
Normal
-0.1
968
Normal
-0.1
958
Normal
-0.1
954
Normal
-0.1
868
Normal
-0.1
863
Tumor
-0.1
358
Normal
-0.1
616
Normal
-0.1
213
Tumor
-0.1
727
Tumor
-0.1
662
Normal
-0.1
524
Normal
-0.1
126
Normal
-0.1
384
Normal
-0.1
314
Normal
-0.1
916
Normal
-0.1
212
Normal
-0.1
666
Normal
-0.1
262
Normal
-0.1
124
Normal
-0.1
627
Tumor
-0.1
914
Normal
-0.1
272
Normal
-0.1
455
Tumor
-0.1
785
Tumor
-0.1
145
Tumor
-0.1
434
Normal
-0.1
963
Tumor
-0.1
514
Normal
-0.1
414
Normal
-0.1
191
Tumor
-0.1
362
Normal
-0.1
311
Tumor
-0.1
671
Tumor
-0.1
536
Normal
-0.1
433
Tumor
-0.2
1015
Tumor
-0.2
123
Tumor
-0.2
192
Normal
-0.2
211
Tumor
-0.2
814
Normal
-0.2
724
Normal
-0.2
385
Tumor
-0.2
715
Tumor
-0.2
268
Normal
-0.2
395
Tumor
-0.2
171
Tumor
-0.3
661
Tumor
-0.3
975
Tumor
-0.3
917
Tumor
-0.3
231
Tumor
-0.3
867
Tumor
-0.3
877
Tumor
-0.3
685
Tumor
-0.3
447
Tumor
-0.4
911
Tumor
-0.4
665
Tumor
-0.4
743
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
